Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0941
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein co...    31   0.41 
At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein co...    30   0.72 
At5g61090.1 68418.m07665 proline-rich family protein contains pr...    27   8.9  
At1g13050.1 68414.m01513 expressed protein                             27   8.9  

>At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 701

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 130 FYVNWSLGFGRRSALDGSSLHQVLWTNIRALCSRIRPRAEF 8
           FY +++ GFG   +L+G  L    W NI   C  ++P  EF
Sbjct: 346 FYSDFNQGFGYHVSLEGRQLSDSPWYNIS--CQSLQPLLEF 384


>At5g05460.1 68418.m00588 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 631

 Score = 30.3 bits (65), Expect = 0.72
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 130 FYVNWSLGFGRRSALDGSSLHQVLWTNIRALCSRIRPRAEF 8
           FY +++ G G  ++L G  L +  W NI   C  ++P  EF
Sbjct: 341 FYSDFNQGLGSHTSLGGRKLSEAPWYNIS--CQSLQPFLEF 379


>At5g61090.1 68418.m07665 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965;
           contains similarity to vegetative cell wall protein gp1
           [Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
           common family members: At4g18570, At3g25690, At4g04980
           [Arabidopsis thaliana]
          Length = 344

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  RPVQGRPSTEAERPVYVKPVN 139
           RPV  RP+ E  RPV  +P++
Sbjct: 129 RPVTARPTPEIPRPVPARPIS 149


>At1g13050.1 68414.m01513 expressed protein
          Length = 317

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 23  PDTRTQSPDVRPEHLVQTRPVQGRPSTEAERPVYVKPVNSANP 151
           P+T  +SP  RP  L    P+  R +  + RP+ + P     P
Sbjct: 61  PETIHESPSSRPLPLRPEEPLPPRHNPNSARPLQLSPEEQRPP 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,518,362
Number of Sequences: 28952
Number of extensions: 202259
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)