Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0940
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    28   0.44 
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   1.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   1.8  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.1  
SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|c...    25   3.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   4.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   4.1  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   4.1  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   5.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   7.2  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   7.2  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    24   7.2  

>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 62  VNGVNQMGVTRAQTTIHNGIRISTARAFLSPITN-RKNLHVIKNTLATKIL-FEKNTNIV 235
           ++G+    +  A + + N + IS  + FL+   N    L+ I  +    ++ FE +TN V
Sbjct: 28  LSGICSRTIQHADSQV-NRLCISPDKKFLAAAGNPHVRLYDINTSSQMPLMTFEGHTNNV 86

Query: 236 SGISIHSDGK 265
           + I+ H DGK
Sbjct: 87  TAIAFHCDGK 96


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = -2

Query: 282 MFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTC-KFFLFVIGLKKARAVLILMPL*I 106
           +FT+IS    C+     IL  +    L+A  F      FFLF   + +   +L L+P  I
Sbjct: 322 IFTLISILPSCV-----ILFLYPRKRLLALGFASASWGFFLFSFQVHEKSVLLPLLPTSI 376

Query: 105 VVC--ALVTPIWLTPFTSLRFFT 43
           ++C   + T  W+    +L  F+
Sbjct: 377 LLCHGNITTKPWIALANNLAVFS 399


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 374 NFLNHFSVQSRTTLKAAVNL*THPILLTPFLC 279
           N + HF ++  T L AA++L T    L  FLC
Sbjct: 457 NAVEHFKLRKITALSAALSLGTVLFCLHTFLC 488


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 321 EFIDPPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNI 205
           E IDP DT+++F    + +  +  ++   ++L  +SNN+
Sbjct: 230 EEIDPKDTLHTFLQIYIFATMANEMDCMSSLLDAYSNNV 268


>SPAC22H10.13 |zym1||metallothionein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 50

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 145 KSPCGTNSNAIMNCSLRSC 89
           K  CG  S+A+ NC   SC
Sbjct: 27  KESCGCKSSAVDNCKCSSC 45


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 383  LFLNFLNHFSVQSRTTLKAAVNL*THPILLTP 288
            + LNF NHFS     T+K A    +  +L+ P
Sbjct: 961  VLLNFYNHFSEPLFVTVKTASTDESRSVLIKP 992


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 372 FFKSLFGPIPDNIKSCG 322
           FF+SLFG      KSCG
Sbjct: 47  FFRSLFGSSSSGSKSCG 63


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 173 LHVIKNTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLS 343
           +HV  +    K    K+   V G  +HS GK   + +  + ++ G +  + Q L LS
Sbjct: 817 IHVQGDVPLVKDNAHKHHVSVGGFGVHSSGKRAVIVVTIDNLLKGAATQALQNLNLS 873


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -2

Query: 369 FKSLFGPIPDNIKSCGEFI---DPPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNILV 199
           F  LF PI  +  + G FI        ++   +F  +S  +L ++ PLT+L    +++L 
Sbjct: 484 FTWLFAPILVSAATFGTFIVLYGKTRVLSVDIVFACLSLFNL-LQFPLTMLPIVVSSVLE 542

Query: 198 ASVFLMTCKFFL 163
           ASV +     FL
Sbjct: 543 ASVAISRIYGFL 554


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 300 TINSFFMFTVISFPSLCIEIPLTIL 226
           T+N  F  T+I  PSL +   LTIL
Sbjct: 526 TLNDVFSQTIIFCPSLAVPPILTIL 550


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 113 NGIRISTARAFLSPITNRKNLHVIKNTLATKILFEKNTNIVS-GISIHSD 259
           +  R+S +R F  P  + KNL V  N L   +  E  ++ +S G S+ +D
Sbjct: 161 SSFRVSRSRYFPRPHRSSKNLSV-SNRLQLAVFKETTSSTLSHGNSVEAD 209


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 160 CYWA*KSPCGTN----SNAIMNCSLRSCYSHLV 74
           C W   +P G      +NAI  C+LR+C + +V
Sbjct: 375 CLWPRTTPFGKTLGPIANAINACALRTCKADVV 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,445
Number of Sequences: 5004
Number of extensions: 31327
Number of successful extensions: 110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)