Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0940
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 52 1e-07
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 50 8e-07
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 49 1e-06
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 49 1e-06
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 46 1e-05
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 44 3e-05
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 44 6e-05
12_02_1100 + 26077776-26077893,26078208-26078434 30 0.74
05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594 28 2.2
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 2.2
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 27 6.9
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 26 9.1
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 26 9.1
01_05_0042 - 17500897-17500953,17501560-17501765,17502055-175022... 26 9.1
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 52.4 bits (120), Expect = 1e-07
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Frame = +2
Query: 89 TRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLATKILFEKNTNIVSGISIHSDGKD 268
T+ TI + A L N NL V+ + T+I+F +I + KD
Sbjct: 216 TKVGGTIFDEAGYRHTAADLLAAGNHNNLRVLLHASVTRIIFNTEQEHRKPRTIGVEFKD 275
Query: 269 ---------ITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
+T N E+I+S G+I SPQLL+LSGIGP+ +LK I V
Sbjct: 276 ENGGQQHAFLTRNRDSEIIISAGAIGSPQLLLLSGIGPRKELKKHNISV 324
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 49.6 bits (113), Expect = 8e-07
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 9/131 (6%)
Frame = +2
Query: 23 EAYTEIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLAT 202
+A E+GV + + G T N + TA FL R L V+ +
Sbjct: 182 DALLEVGVTPDNGFTFDHVTGTKIGGTIFDNSGQRHTAADFLRHARPR-GLTVLLYATVS 240
Query: 203 KILFEKNTNIVSGIS---IHSDGKDITVNI------KKELIVSGGSINSPQLLMLSGIGP 355
+ILF+ + ++ + SD + + K E+IVS G++ SPQLLMLSG+GP
Sbjct: 241 RILFKSQDGVPYPVAYGVVFSDPLGVQHRVYLRDGDKNEVIVSAGTLGSPQLLMLSGVGP 300
Query: 356 KSDLKNLGIDV 388
++ L+ GI+V
Sbjct: 301 QAHLEAHGIEV 311
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 49.2 bits (112), Expect = 1e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 278 NIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
N E+IVS G+I SPQLL+LSGIGPK+DL++ I V
Sbjct: 274 NCDSEIIVSAGAIGSPQLLLLSGIGPKNDLRSHKIPV 310
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/33 (66%), Positives = 28/33 (84%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
E+I+S GS+ SPQLL+LSGIGP +DL +LGI V
Sbjct: 301 EVILSAGSLGSPQLLLLSGIGPANDLTSLGIPV 333
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 46.0 bits (104), Expect = 1e-05
Identities = 19/33 (57%), Positives = 27/33 (81%)
Frame = +2
Query: 284 KKELIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
K E+IV+ G++ SPQLLMLSG+GP+ +L+ GI
Sbjct: 272 KSEVIVTAGTLGSPQLLMLSGVGPRGELEKHGI 304
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 44.4 bits (100), Expect = 3e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 284 KKELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
+ E+I+S G++ SPQLLMLSG+GP L+ GI +
Sbjct: 266 RNEIILSAGALGSPQLLMLSGVGPADHLEEFGISL 300
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 43.6 bits (98), Expect = 6e-05
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
E+I+S G++ SPQLLMLSG+GP L++ GI
Sbjct: 275 EIILSAGAMGSPQLLMLSGVGPADHLRSFGI 305
>12_02_1100 + 26077776-26077893,26078208-26078434
Length = 114
Score = 29.9 bits (64), Expect = 0.74
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 303 DTINSFFMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCKFFLFVIGLK 145
D NS F+FT +C+ + + LV + N AS FL C L +GL+
Sbjct: 28 DANNSSFVFTPWLCMHVCLLVTVLRLVIPAGNCQAASSFLSRCVLVLPSLGLQ 80
>05_03_0002 - 7278527-7279675,7279768-7280325,7280433-7280594
Length = 622
Score = 28.3 bits (60), Expect = 2.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 381 IPKFFKSLFGPIPDNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEI 241
+ +FF +L GP D +KS E + P D F + +S +C+ +
Sbjct: 224 VDRFFAALEGPELDQLKSEEELVLPSDKTWPFLLRFPVSAFGMCLGV 270
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 381 IPKFFKSLFGPIPDNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEI 241
+ +FF +L GP D ++S E + P D F + +S +C+ +
Sbjct: 230 VDRFFAALEGPELDKLRSSEELVLPSDKTWPFLLRFPVSAFGICLGV 276
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 363 SLFGPIPDNIKSCGEFI 313
+L GPIPDNI SC I
Sbjct: 281 NLEGPIPDNISSCMNLI 297
>08_02_0076 + 11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/76 (22%), Positives = 38/76 (50%)
Frame = +2
Query: 50 NLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLATKILFEKNTN 229
++S + G+NQ+ + + ++++N ++A L N LH+ TL+ + +
Sbjct: 796 SISQLRGLNQLRGSISISSLYNAGHEEASQARLCDKDNLTCLHLSWLTLSRNRVARRTLP 855
Query: 230 IVSGISIHSDGKDITV 277
I+ + HS K++ V
Sbjct: 856 ILEDLKPHSGLKNLQV 871
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +2
Query: 110 HNGIRISTARAFLSPITNRKNLHVIKNTLATKILFEKNTNIVSGISIHSDGKDITVNIKK 289
HNG ST+ P+ + N H++ + +N+ I + + H+ + I + +
Sbjct: 735 HNGNMASTSYRERRPVEHTSNSHLLSTSAPRANEQSRNSKIENELIWHAVLESIQSDTLR 794
Query: 290 ELIVSGGSINSPQL 331
+++ G ++S L
Sbjct: 795 KIMAKEGRLSSVSL 808
>01_05_0042 -
17500897-17500953,17501560-17501765,17502055-17502293,
17502386-17502442,17504214-17504672,17507866-17508377
Length = 509
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -2
Query: 297 INSFFMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCKFFLFVIGLKKARAVL 127
I F FTV S ++ I ++ + ++F+ C F ++ +G+ A A L
Sbjct: 215 IPGLFAFTVAQCLSKFLQTQSLIFPMVLSSSITLALFIPLCWFMVYKVGMGNAGAAL 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,454
Number of Sequences: 37544
Number of extensions: 172154
Number of successful extensions: 473
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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