Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0940
(388 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22499| Best HMM Match : VAR1 (HMM E-Value=1.6) 30 0.57
SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34) 29 1.3
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_42444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9) 29 1.8
SB_54756| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_28156| Best HMM Match : PAN (HMM E-Value=5.6) 28 3.1
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 27 4.0
SB_3| Best HMM Match : Peptidase_C21 (HMM E-Value=5) 27 4.0
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 27 5.3
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 27 5.3
SB_23027| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7) 27 7.1
SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081) 26 9.3
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1) 26 9.3
>SB_22499| Best HMM Match : VAR1 (HMM E-Value=1.6)
Length = 514
Score = 30.3 bits (65), Expect = 0.57
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +2
Query: 161 NRKNLHVIKNTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLML 340
+R N ++ N L + N IV GIS +++ ++ K ELIV G I+ L++
Sbjct: 351 SRNNELILNNELIVFGISRNNELIVFGISRNNELIVFGISRKNELIVFG--ISRKNKLIV 408
Query: 341 SGIGPKSDLKNLGI 382
GI +DL GI
Sbjct: 409 FGISRNNDLIVFGI 422
Score = 29.1 bits (62), Expect = 1.3
Identities = 32/116 (27%), Positives = 51/116 (43%)
Frame = +2
Query: 35 EIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLATKILF 214
E+ V +S N + G++R I GI + +R N ++ L
Sbjct: 228 ELIVFGISRNNELIVFGISRNNELIVFGISRNNELIVFG--ISRNNELIVFGVSRNNELI 285
Query: 215 EKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
N IV GIS +++ ++ K ELIV G S N+ L++ GI ++L GI
Sbjct: 286 SNNELIVFGISRNNELIVFGISRKNELIVFGVSRNNE--LIVFGISTNNELIVFGI 339
Score = 28.7 bits (61), Expect = 1.8
Identities = 23/66 (34%), Positives = 35/66 (53%)
Frame = +2
Query: 185 KNTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSD 364
KN L + KN IV GIS ++D ++ K +LIV G S N+ L++ G+ ++
Sbjct: 392 KNELIVFGISRKNKLIVFGISRNNDLIVFGISRKNKLIVFGISRNNE--LIVFGVSRNNE 449
Query: 365 LKNLGI 382
L GI
Sbjct: 450 LIVFGI 455
Score = 28.3 bits (60), Expect = 2.3
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +2
Query: 188 NTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDL 367
N L + ++ N IV GIS +++ ++ K ELIV G S N+ L++ GI ++L
Sbjct: 194 NELISFVISRNNELIVFGISRNNELIVFGISRKNELIVFGISRNNE--LIVFGISRNNEL 251
Query: 368 KNLGI 382
GI
Sbjct: 252 IVFGI 256
Score = 27.5 bits (58), Expect = 4.0
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Frame = +2
Query: 35 EIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVI-----KNTLA 199
E+ V +S N + G++R I G+ S +S + +R N ++ N L
Sbjct: 162 ELIVFGISRDNELIVFGISRNNELIVFGV--SRNNELISFVISRNNELIVFGISRNNELI 219
Query: 200 TKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLG 379
+ KN IV GIS +++ ++ ELIV G S N+ L++ GI ++L G
Sbjct: 220 VFGISRKNELIVFGISRNNELIVFGISRNNELIVFGISRNNE--LIVFGISRNNELIVFG 277
Query: 380 I 382
+
Sbjct: 278 V 278
>SB_48653| Best HMM Match : ABC_membrane (HMM E-Value=0.34)
Length = 264
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -2
Query: 162 FVIGLKKARAVLILMPL*IVVCALVTPIWLTPFTSLRFFTPISV*ASCRFL 10
F IG + + L + VC+ + +TPFT LR + V SC L
Sbjct: 53 FAIGSEMTQRDAFLFAFGVAVCSFLNSFLITPFTYLRQLFGMRVRISCTAL 103
>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 315 IDPPDTINSFFMFTVISFPSLCIEIPLTILVF-FSNNILVASVFLMTCKFFLFVIGLKKA 139
I P + S FT++SFP I + + L F + + + + + +T F + G+
Sbjct: 734 IIPHEPFTSGHFFTLVSFPMAAITVVVMFLYFQLTRTVAIRTCYRVTFIFLMLAWGI--- 790
Query: 138 RAVLILMPL 112
AVL+L+ +
Sbjct: 791 IAVLVLIQI 799
>SB_42444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 109
Score = 28.7 bits (61), Expect = 1.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 104 TIHNGIRISTARAFLSPITNRKNLHVI 184
T+H G+ + T R L IT RK LH++
Sbjct: 9 TVHKGLHLLTVRKGLHLITVRKGLHLL 35
>SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)
Length = 489
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 41 GVKNLSDVNGVNQMGVTRAQ--TTIHNGIRISTARAFLSPITNRKNLHVI 184
G + L+ +G++ + V + T+H G+ + T R L +T RK LH++
Sbjct: 70 GAQRLTFTHGLHLLTVRKGLHLLTVHKGLHLLTVRKGLHLLTVRKILHLL 119
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 104 TIHNGIRISTARAFLSPITNRKNLHVI 184
T+H G+ + T R L +T RK LH++
Sbjct: 406 TVHKGLHLLTVRKGLHLLTVRKGLHLL 432
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 104 TIHNGIRISTARAFLSPITNRKNLHVI 184
T+ G+R+ T R L +T RK LH++
Sbjct: 6 TVRKGLRLLTVRKGLHLLTVRKGLHLL 32
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 104 TIHNGIRISTARAFLSPITNRKNLHVI 184
T+ G+R+ T R L +T RK LH++
Sbjct: 379 TVRKGLRLLTVRKGLHLLTVRKGLHLL 405
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 104 TIHNGIRISTARAFLSPITNRKNLHVI 184
T+ G+ + TAR L +T RK LH++
Sbjct: 164 TVRKGLHLLTARKGLHLLTVRKGLHLL 190
>SB_54756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.3 bits (60), Expect = 2.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 186 LMTCKFFLFVIGLKKARAV---LILMPL*-IVVCALVTPIWLTPFTSLRF 49
L+ L +I L++ RAV + L+PL + +CALV W TP + F
Sbjct: 53 LLVSPVTLLIISLERFRAVSASVKLLPLSRVTLCALVAVSWATPIGVVAF 102
>SB_28156| Best HMM Match : PAN (HMM E-Value=5.6)
Length = 305
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -2
Query: 342 DNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNIL 202
DN F DT +F + SF +LC + + ++ NN++
Sbjct: 2 DNSSDISHFAVNVDTAMNFLSQRIFSFETLCALLAVLFVILVGNNLI 48
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 139 PCGTNSNAIMNCSLRSCYSHLV 74
PCG N + NC R+C S +V
Sbjct: 305 PCGQNEHEYSNCCERACQSDIV 326
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 263 KDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNL 376
KD++ K L S G I SP++ L+G P++D + L
Sbjct: 609 KDLSAIGKPSLAFSPGYIGSPRVQSLAGSPPENDTRAL 646
>SB_3| Best HMM Match : Peptidase_C21 (HMM E-Value=5)
Length = 186
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 189 FLMTCKFFLFVIGLKKARAVLILMPL*IVVCALVTPIWLTPFTSLR 52
FLMT + F AR +L P VVCA+ +W P S R
Sbjct: 137 FLMTEARWRFSWWKSSARVRRMLKPAVKVVCAMYVRLWAAPTKSKR 182
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -2
Query: 285 FMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCK 172
++ V FP++ + L+ F N++++ + L TCK
Sbjct: 252 YVVIVAVFPAIAVIFVAVDLIGFVANVMMSEIILCTCK 289
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 27.1 bits (57), Expect = 5.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 DGKDITVNIKKELIVSGGSINSPQLLML--SGIGPKSDLKNLGI 382
D +T+NIKK I+ G + +L + SG+G ++ K LGI
Sbjct: 336 DANRLTLNIKKSKIMIVGGSQAKLILTINGSGLGRETCYKYLGI 379
>SB_23027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/95 (20%), Positives = 41/95 (43%)
Frame = -2
Query: 300 TINSFFMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCKFFLFVIGLKKARAVLIL 121
T+N +FT + + + + +TI++ + ++ + + VI + ++I+
Sbjct: 21 TVNVIIIFTAAAAAAAAVVVIITIIIMIITETTIINIITIIVTININVIIIIVDIIIIII 80
Query: 120 MPL*IVVCALVTPIWLTPFTSLRFFTPISV*ASCR 16
+ I++ +T TSLR T I CR
Sbjct: 81 ITFPIIIFIEIT------ITSLRIITVIIYDPQCR 109
>SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7)
Length = 692
Score = 26.6 bits (56), Expect = 7.1
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Frame = +2
Query: 35 EIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVI---KNTLATK 205
E+ V +S N + G++R I GI + N + + + N L
Sbjct: 550 ELIVFGVSRNNELIVFGISRNNELIVFGISRNNELIVFGVSRNNELISFVISRNNELIVF 609
Query: 206 ILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
+ N IV GIS +++ ++ K ELIV G S N+ L++ GI ++L GI
Sbjct: 610 GISRNNELIVFGISRNNELIVFGISRKNELIVFGVSRNNE--LIVFGISTNNELIVFGI 666
Score = 26.2 bits (55), Expect = 9.3
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +2
Query: 188 NTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSDL 367
N L + ++ N IV GIS +++ ++ ELIV G S N+ L++ GI ++L
Sbjct: 351 NELISFVISRNNELIVFGISRNNELIVFGISRNNELIVFGISRNNE--LIVFGISRNNEL 408
Query: 368 KNLGI 382
GI
Sbjct: 409 IVFGI 413
>SB_38524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 26.2 bits (55), Expect = 9.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 297 INSFFMFTVISFPSLCIE-IPLTILVFFSNNILVASVFLMTCKFFLFVIGLKKARAVLIL 121
+ F + +S +C+ +PLTI V FS + +S +TCK F+ L ++ IL
Sbjct: 64 VQLFLLHLAVSDLMVCLLCVPLTIFVNFSYSEHHSSSDDVTCKVARFIQFLAPTSSICIL 123
>SB_9325| Best HMM Match : Exo_endo_phos (HMM E-Value=0.081)
Length = 249
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 351 PIPDNIKSCGEFID-PPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNILVASV 190
P+ + S E I+ PP TIN +F + + SLC ++ V N + VA +
Sbjct: 14 PVVERTGSPPEVIERPPITINRVPVFLLSNVRSLCPKVDELECVLIHNQVDVACI 68
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 26.2 bits (55), Expect = 9.3
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 47 KNL--SDVNGVNQMGVTR-AQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLATKILFE 217
KNL S +G +Q R + + IR + R L+ TN KN+L TK E
Sbjct: 177 KNLQSSSASGADQNDQNREVEGVVTGSIRENIVRNSLN--TNSIETETHKNSLETKSNDE 234
Query: 218 KNTNIVSGISIHSDGKDITVNIKKE 292
+N+N H+ D+ + K +
Sbjct: 235 ENSNFNENSQEHNIDSDVEESSKNK 259
>SB_39213| Best HMM Match : PqiA (HMM E-Value=2.1)
Length = 378
Score = 26.2 bits (55), Expect = 9.3
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 185 KNTLATKILFEKNTNIVSGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIGPKSD 364
KN L + N IV GIS +++ ++ K +LIV G S N+ L++ GI K+
Sbjct: 13 KNKLIVFGISRNNELIVFGISRNNELIVFGISRKNKLIVFGISRNNE--LIVFGISRKNK 70
Query: 365 LKNLGI 382
L GI
Sbjct: 71 LIVFGI 76
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,458,159
Number of Sequences: 59808
Number of extensions: 208640
Number of successful extensions: 584
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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