Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0940
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72970.1 68414.m08439 glucose-methanol-choline (GMC) oxidored... 49 1e-06
At1g14190.1 68414.m01679 glucose-methanol-choline (GMC) oxidored... 48 3e-06
At1g14185.1 68414.m01678 glucose-methanol-choline (GMC) oxidored... 47 5e-06
At5g51950.1 68418.m06447 glucose-methanol-choline (GMC) oxidored... 43 6e-05
At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative / (R... 43 6e-05
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored... 42 2e-04
At5g51930.1 68418.m06442 glucose-methanol-choline (GMC) oxidored... 40 6e-04
At3g56060.1 68416.m06229 glucose-methanol-choline (GMC) oxidored... 39 0.001
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp... 29 0.82
At1g77090.1 68414.m08978 thylakoid lumenal 29.8 kDa protein iden... 29 0.82
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 29 0.82
At5g26340.1 68418.m03148 hexose transporter, putative strong sim... 28 2.5
At4g03830.1 68417.m00534 myosin heavy chain-related 27 3.3
At4g23660.2 68417.m03407 UbiA prenyltransferase family protein s... 27 4.4
At4g23660.1 68417.m03406 UbiA prenyltransferase family protein s... 27 4.4
At4g19380.1 68417.m02853 alcohol oxidase-related similar to long... 27 4.4
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 27 5.8
At5g26270.1 68418.m03135 expressed protein ; expression support... 27 5.8
At3g19780.1 68416.m02504 expressed protein 27 5.8
At1g79570.1 68414.m09276 protein kinase family protein low simil... 27 5.8
At1g78980.1 68414.m09209 leucine-rich repeat transmembrane prote... 27 5.8
At5g21222.1 68418.m02532 protein kinase family protein contains ... 26 7.6
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ... 26 7.6
At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,... 26 7.6
>At1g72970.1 68414.m08439 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 594
Score = 48.8 bits (111), Expect = 1e-06
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Frame = +2
Query: 23 EAYTEIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNLHVIKNTLAT 202
++ E+GV+ + + G T R TA L+ N + L V+
Sbjct: 193 DSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLA-YANPQKLRVLIYATVQ 251
Query: 203 KILFEKNTNI--VSGISIHSDGKD-----ITVNIK-KELIVSGGSINSPQLLMLSGIGPK 358
KI+F+ + V+G+ I D K + N K E+I+S G+I SPQ+LMLSGIGPK
Sbjct: 252 KIVFDTSGTRPRVTGV-IFKDEKGNQHQALLSNRKGSEVILSSGAIGSPQMLMLSGIGPK 310
Query: 359 SDLKNLGIDV 388
+L+ L I V
Sbjct: 311 KELQRLKIPV 320
>At1g14190.1 68414.m01679 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 501
Score = 47.6 bits (108), Expect = 3e-06
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Frame = +2
Query: 179 VIKNTLATKILFEKN--TNIVSGISIHSDG---KDITVNIKK---ELIVSGGSINSPQLL 334
V+ NT I+F+ + T V + SDG K V++++ E+I++ G++ SPQ+L
Sbjct: 198 VLLNTTVKSIIFDSSNKTRAVGVRFMESDGNSSKSYKVHVEQHRGEVILAAGALGSPQIL 257
Query: 335 MLSGIGPKSDLKNLGIDV 388
+LSGIGP++ LK+ I V
Sbjct: 258 LLSGIGPENHLKDFDIPV 275
>At1g14185.1 68414.m01678 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 503
Score = 46.8 bits (106), Expect = 5e-06
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Frame = +2
Query: 179 VIKNTLATKILFEKNTNIVSGIS-IHSDG---KDITVNIKK---ELIVSGGSINSPQLLM 337
V+ N I+F+ N G+ + SDG K V++++ E+I++ G++ SPQ+L+
Sbjct: 219 VLLNATVKSIIFDANKTRAVGVRFMESDGNSSKSYKVHVEQHRGEVILAAGALGSPQILL 278
Query: 338 LSGIGPKSDLKNLGIDV 388
LSGIGP++ L + I V
Sbjct: 279 LSGIGPENHLNDFDIPV 295
>At5g51950.1 68418.m06447 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 586
Score = 43.2 bits (97), Expect = 6e-05
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +2
Query: 266 DITVNIKKELIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
++ N E+I+S G+I SPQLLMLSGIGP + L GI
Sbjct: 264 ELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLAAHGI 302
>At1g73050.1 68414.m08447 (R)-mandelonitrile lyase, putative /
(R)-oxynitrilase, putative similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|52707];
contains Pfam protile PF00732 GMC oxidoreductase
Length = 552
Score = 43.2 bits (97), Expect = 6e-05
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
E+I+S G++ SPQLL LSGIGP+S L GI V
Sbjct: 284 EVILSAGALGSPQLLFLSGIGPRSYLSTWGIPV 316
>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 572
Score = 41.5 bits (93), Expect = 2e-04
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGIDV 388
E+I+S G++ SPQLLMLSG+GP + L+ I V
Sbjct: 272 EIILSAGTLGSPQLLMLSGVGPSAQLQAQNITV 304
>At5g51930.1 68418.m06442 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 582
Score = 39.9 bits (89), Expect = 6e-04
Identities = 17/32 (53%), Positives = 25/32 (78%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDLKNLGID 385
E+I+S G++ SPQLLMLSG+GP L+ G++
Sbjct: 293 EVILSAGALGSPQLLMLSGVGPAVHLEAHGVN 324
>At3g56060.1 68416.m06229 glucose-methanol-choline (GMC)
oxidoreductase family protein similar to mandelonitrile
lyase from Prunus serotina [SP|P52706, SP|P52707];
contains Pfam profile PF00732 GMC oxidoreductase
Length = 577
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 290 ELIVSGGSINSPQLLMLSGIGPKSDL 367
E+I+S G+I SPQLLMLSG+GP + L
Sbjct: 274 EVILSAGAIASPQLLMLSGVGPAAHL 299
>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
component-related / COG complex component-related
similar to SP|Q96MW5 Conserved oligomeric Golgi complex
component 8 {Homo sapiens}; contains Pfam profile
PF04124: Dor1-like family
Length = 569
Score = 29.5 bits (63), Expect = 0.82
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 387 TSIPKFFKSLFGPIPDNIKSCGEFIDPPDTI 295
+SI K +SL G +P C EFID + I
Sbjct: 84 SSIDKHLESLIGEVPKLTSGCTEFIDSAENI 114
>At1g77090.1 68414.m08978 thylakoid lumenal 29.8 kDa protein
identical to SP|O49292|TL30_ARATH (Arabidopsis
thaliana);contains a PsbP domain AF370571; SIMILAR TO
GI:13926195--F22K20.16
Length = 260
Score = 29.5 bits (63), Expect = 0.82
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 259 WKRYNS-EHKKGVNSIGWVYKFTAAFNVVRDWTE 357
W+ Y + K G + +GW AF+V +DW E
Sbjct: 93 WRTYRRPDEKSGGHGVGWSPIIPYAFSVPQDWNE 126
>At1g03060.1 68414.m00280 WD-40 repeat family protein /
beige-related similar to BEIGE (GI:3928547) [Rattus
norvegicus]; Similar to gb|U70015 lysosomal trafficking
regulator from Mus musculus and contains 2 Pfam PF00400
WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
come from this gene
Length = 3601
Score = 29.5 bits (63), Expect = 0.82
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 236 SGISIHSDGKDITVNIKKELIVSGGSINSPQLLMLSGIG 352
SG+S HSD K + + +K L I+SP+ LM SG G
Sbjct: 640 SGVSSHSDRKPSSGSFRKNLDTKDAIISSPK-LMESGSG 677
>At5g26340.1 68418.m03148 hexose transporter, putative strong
similarity to hexose transporter, Lycopersicon
esculentum, GI:5734440; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 526
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 297 INSFFMFTVI-SFPSLCIEIPLTILVFFSNNILVASVFLM 181
+N F F + +F S+ I +FFS +L+ SVF+M
Sbjct: 431 VNLLFTFIIAQAFLSMLCHFKFGIFIFFSAWVLIMSVFVM 470
>At4g03830.1 68417.m00534 myosin heavy chain-related
Length = 578
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -2
Query: 327 CGEFIDPPDTINSFFMFTVISFPSLCIEIPLTILVFFSNNILVASVFLMTCKFFLFVIGL 148
CG + PD + F I+ P LC + TIL + + FL++ L + +
Sbjct: 72 CGLYFPLPDILIDFMHEFGIALPQLCPNVIRTILSLLT--LAEEDNFLLSLPDLLQLYAI 129
Query: 147 KKAR 136
KK R
Sbjct: 130 KKGR 133
>At4g23660.2 68417.m03407 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 229 YR*WNFNTQ*WKRYNSEHKKGVNSIGWVYK 318
Y WN N Q W + H++ +GW Y+
Sbjct: 52 YPSWNDNYQVWSKGRELHQEKFFGVGWNYR 81
>At4g23660.1 68417.m03406 UbiA prenyltransferase family protein
similar to para-hydroxybenzoate--polyprenyltransferase,
mitochondrial [Precursor] [Saccharomyces cerevisiae],
SP|P32378; contains PF01040 UbiA prenyltransferase
family domain
Length = 407
Score = 27.1 bits (57), Expect = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 229 YR*WNFNTQ*WKRYNSEHKKGVNSIGWVYK 318
Y WN N Q W + H++ +GW Y+
Sbjct: 52 YPSWNDNYQVWSKGRELHQEKFFGVGWNYR 81
>At4g19380.1 68417.m02853 alcohol oxidase-related similar to long
chain fatty alcohol oxidase from Candida cloacae
[GI:6983581], Candida tropicalis [GI:6983594]
Length = 726
Score = 27.1 bits (57), Expect = 4.4
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Frame = +2
Query: 116 GIRISTARAFLSPITNRKNLHVIKNTLATKILFE---KNTNIVSGISIHSDGKDITVNIK 286
G + T+ +L + N ++ AT+++++ +G++ + G++I V
Sbjct: 393 GQKQGTSETWLVDLVESDNGLILPGCQATEVMYDCEQGKKKKATGVAF-AFGEEIYVVES 451
Query: 287 KELIVSGGSINSPQLLMLSGIGPKSDLKNL 376
+ IV+ G++ +P LL SG+ + +NL
Sbjct: 452 RVTIVACGALRTPHLLKRSGLKNSNIGRNL 481
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +2
Query: 212 FEKNTNIVSGISIHSD 259
FE+ TNIV+GIS++ D
Sbjct: 20 FEEETNIVTGISLYED 35
>At5g26270.1 68418.m03135 expressed protein ; expression supported
by MPSS
Length = 305
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 102 VCALVTPIWLTPFTSLRFFTPI 37
+C+ V+ +TPF LRFFT +
Sbjct: 50 LCSTVSSYGVTPFVFLRFFTAV 71
>At3g19780.1 68416.m02504 expressed protein
Length = 1014
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 158 TNRKNLHVIKNTLATKILFEKNTNIVSGISIHSDGKDITVN 280
TNR V+ T T++ + N N +S+HS+ K+ V+
Sbjct: 542 TNRSEQLVVAETDKTEVYLKDNVNGEIKVSLHSEPKEDLVH 582
>At1g79570.1 68414.m09276 protein kinase family protein low
similarity to EDR1 [Arabidopsis thaliana] GI:11127925
Length = 1248
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Frame = +2
Query: 26 AYTEIGVKNLSDVNGVNQMGVTRAQTTIHNGIRIST----ARAFLSPI 157
A TEIGV NLS VN + Q ++ I I R FLS I
Sbjct: 741 ADTEIGVSNLSHVNAAMSHVIPEEQASLQGDILIDINDRFPRDFLSEI 788
>At1g78980.1 68414.m09209 leucine-rich repeat transmembrane protein
kinase, putative similar to leucine-rich repeat
transmembrane protein kinase 2 GI:3360291 from [Zea
mays]
Length = 693
Score = 26.6 bits (56), Expect = 5.8
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 119 IRISTARA--FLSPITNRKNLHVIKNTLATKILFEKNTNIVSGISIHSDGKDITVNIKKE 292
I + TARA +L + +H KN ++ IL + + N +S + K V+IK
Sbjct: 500 IALGTARAVEYLHEACSPSVMH--KNIKSSNILLDADLN--PRLSDYGLSKFYLVSIKTS 555
Query: 293 LIVSGGSINSPQLLMLSGIGPKSDLKNLGI 382
+ G N+P+ S PKSD+ + G+
Sbjct: 556 QNLGEG-YNAPEARDPSAYTPKSDVYSFGV 584
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 23 EAYTEIGVKNLSDVNGVNQMGVTRAQTTIHNGIRISTARAFLSPITNRKNL 175
+ + IGV N +D N + T ++ I N I S + FL + + L
Sbjct: 750 DGWKSIGVSNSNDANTLGSSFSTSSKLNIPNNIASSRSPLFLKGMPEKPKL 800
>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 599
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 366 KSLFGPIPDNIKSCGEFIDPPDTINSFFMFTVISFPSLCIEIPLT 232
KS +G I DN CG++I P + +F S + C++ T
Sbjct: 118 KSGWGNIFDNCTWCGKYIPTPSSHPRMTVFYRCSICNFCLDTMCT 162
>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 847
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/32 (43%), Positives = 23/32 (71%)
Frame = +2
Query: 233 VSGISIHSDGKDITVNIKKELIVSGGSINSPQ 328
VSG S+ D + IT+N K+ +++S GSI+ P+
Sbjct: 30 VSG-SVSYDSRAITINGKRRILIS-GSIHYPR 59
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,688
Number of Sequences: 28952
Number of extensions: 152728
Number of successful extensions: 534
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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