Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0939
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 29 1.9
At3g29100.1 68416.m03643 vesicle transport v-SNARE 13 (VTI13) / ... 28 3.3
At1g69790.1 68414.m08030 protein kinase, putative similar to pro... 27 4.3
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 27 7.5
At1g14370.1 68414.m01703 protein kinase (APK2a) identical to pro... 27 7.5
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 26 10.0
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 26 10.0
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 26 10.0
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 26 10.0
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 28.7 bits (61), Expect = 1.9
Identities = 20/69 (28%), Positives = 28/69 (40%)
Frame = +2
Query: 167 CIVLFRYSCFYW*WSIL*ARAIKYQ*HHCSADFC*ESIMLSAWEVNLCQFKLDKNCMYR* 346
CI + C Y+ + I R HH F S+ W +C+ K+D NC
Sbjct: 273 CIFVVHRDCIYFPFVIKICR------HHHRISFT-SSLPSGKWSCGVCRQKVDNNCGAYT 325
Query: 347 RNICLYYTV 373
N C +Y V
Sbjct: 326 CNKCNHYFV 334
>At3g29100.1 68416.m03643 vesicle transport v-SNARE 13 (VTI13) /
vesicle soluble NSF attachment protein receptor 13
identical to identical to Vesicle transport v-SNARE 13
(SP:Q9LVP9) {Arabidopsis thaliana}; similar to v-snare
AtVTI1a (GI:6690274) (GB:AAF24061) [Arabidopsis
thaliana]
Length = 195
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -3
Query: 389 GSLIRLPYNIDKYFFSDTCSFY---LI*TGRGLPPKRKA*LILSRNQQNS 249
GS + Y +D YF S CSF + R LPP K+ L++ + S
Sbjct: 4 GSFTVVLYAVDGYFLSTFCSFQVKKMDLEARNLPPNVKSSLLVKLREYKS 53
>At1g69790.1 68414.m08030 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
SWISS-PROT:Q06548
Length = 387
Score = 27.5 bits (58), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 277 NHAFRLGGKPLPV*IR*KLHVSLKKYLSILYGRRI 381
NH FR G +P+P R K+ S + LS L+ ++
Sbjct: 177 NHLFRRGAEPIPWKTRMKVAFSAARGLSFLHEAKV 211
>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7)
(DNA polymerase II subunit A) {Homo sapiens}; contains
Pfam profiles: PF03175 DNA polymerase type B, organellar
and viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2138
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 328 KLHVSLKKYLSILYGRRISDPLNQVMKSGMIYDSN 432
KL LKKY Y R + P+ +V ++G+ N
Sbjct: 682 KLKERLKKYCQKAYSRVLDKPITEVREAGICMREN 716
>At1g14370.1 68414.m01703 protein kinase (APK2a) identical to
protein kinase APK2a GI:2852447 from [Arabidopsis
thaliana]
Length = 426
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 277 NHAFRLGGKPLPV*IR*KLHVSLKKYLSILY 369
NH FR G +PL IR K+ V K L+ L+
Sbjct: 179 NHLFRRGAQPLTWAIRMKVAVGAAKGLTFLH 209
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 26.2 bits (55), Expect = 10.0
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 167 CIVLFRYSCFYW*WSIL*ARAIKYQ*HHCSADFC*ESIMLSAWEVNLCQFKLDKNCMYR* 346
CI + C Y+ + I + ++Q H S S+ W +C+ K+D NC
Sbjct: 271 CIFVAHRDCIYFPYVI---KICRHQ-HRISFT---SSLPSGKWSCGVCRKKVDNNCGAYT 323
Query: 347 RNICLYYTV 373
N C +Y V
Sbjct: 324 CNKCSHYFV 332
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 263 FC*ESIMLSAWEVNLCQFKLDKNC 334
FC E ++ + +LC F +D NC
Sbjct: 94 FCREELVDPMYHCSLCNFSIDVNC 117
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 277 NHAFRLGGKPLPV*IR*KLHVSLKKYLSILY 369
NH FR G +PL IR K+ + K L+ L+
Sbjct: 176 NHLFRRGAQPLTWAIRMKVAIGAAKGLTFLH 206
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 277 NHAFRLGGKPLPV*IR*KLHVSLKKYLSILY 369
NH FR G +PL IR K+ + K L+ L+
Sbjct: 176 NHLFRRGAQPLTWAIRMKVAIGAAKGLTFLH 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,504,339
Number of Sequences: 28952
Number of extensions: 130587
Number of successful extensions: 232
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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