Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0938
         (613 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    39   0.081
UniRef50_Q22UP5 Cluster: Cation channel family protein; n=1; Tet...    33   4.0  
UniRef50_P0C262 Cluster: Putative membrane protein ycf1 C-termin...    33   5.3  
UniRef50_Q22M70 Cluster: TPR Domain containing protein; n=2; Tet...    33   7.1  
UniRef50_Q7RQK1 Cluster: Ymf77; n=3; Plasmodium (Vinckeia)|Rep: ...    32   9.3  

>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 39.1 bits (87), Expect = 0.081
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
 Frame = +1

Query: 166 QFLFYICFCNYVMF*LSFCINIRNVYFTRNYISN*RNLIF-YLVNLHNYFI--*RIYILK 336
           ++  YI + NY+ +   + INI N+YF +N   N  N I  +++  +NY+I    + + +
Sbjct: 613 KYNLYIIYNNYIKYLYKYNINI-NLYFIKNLFYNNNNFIHNHIIYKNNYYIYNNNMNLYQ 671

Query: 337 KISNILYYIFNNDLFNASFY 396
              NIL  I NN L+N  FY
Sbjct: 672 YNKNIL--INNNLLYNKLFY 689


>UniRef50_Q22UP5 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 2710

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +1

Query: 166 QFLFYICFCNYVMF*LSFCINIRNVYFTRNYISN*RNLIFYLVNLHNYFI*RIYILKKIS 345
           QF+  I  C + +F + F I++   YF R+ I   R LI        Y     ++  ++S
Sbjct: 352 QFIIRISSCAFFLFLIDFLISLNTAYFDRDSIITKRKLI-----ARYYIFSTKFVTDQVS 406

Query: 346 NILYYIFNNDLFNASFYQTPYYNL 417
             L+ +    L+  SF   P +NL
Sbjct: 407 --LFVLAIKILYQESFIYNPNHNL 428


>UniRef50_P0C262 Cluster: Putative membrane protein ycf1 C-terminal
            part; n=1; Piper cenocladum|Rep: Putative membrane
            protein ycf1 C-terminal part - Piper cenocladum (Ant
            piper)
          Length = 1535

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +2

Query: 59   YFCLKRKFSSNTLTGQEILLFIHFRHAL*SYKFIH 163
            Y+  ++ F  N+LT Q+  L  H+R+ L SYK++H
Sbjct: 987  YYKKQKNFRMNSLTNQKEKLKKHYRYDLSSYKYLH 1021


>UniRef50_Q22M70 Cluster: TPR Domain containing protein; n=2;
            Tetrahymena thermophila SB210|Rep: TPR Domain containing
            protein - Tetrahymena thermophila SB210
          Length = 1766

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +2

Query: 17   AYIYLKKKRFYKVKYFCLKRKFSSNTLTGQEILLFIHFRHAL*SYKFIHN 166
            AY YLKK ++Y+V Y CLK++   N++  +   +F         Y+ + N
Sbjct: 1695 AYAYLKKFKYYQVIY-CLKKQIKINSIDDRSSCMFARLHIKQKKYEKVTN 1743


>UniRef50_Q7RQK1 Cluster: Ymf77; n=3; Plasmodium (Vinckeia)|Rep:
           Ymf77 - Plasmodium yoelii yoelii
          Length = 683

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 241 YFTRNYISN*RNLIFYLVNLHNYFI*RIYILKKISN--ILYYIFNNDLFNASF-YQTPYY 411
           Y    Y+   +NLI+Y+ N  N     IY + KI N  I+ +I+N +++     +QT YY
Sbjct: 59  YLQNKYLFIHKNLIYYICNKANNT--SIYSIFKIKNEFIIDHIYNCNIYKYKCNFQTGYY 116

Query: 412 N 414
           N
Sbjct: 117 N 117


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 474,114,178
Number of Sequences: 1657284
Number of extensions: 8330378
Number of successful extensions: 19437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19411
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)