Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0938
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 437 HHCFFFFLRDYWLLRGLSRFTRTGGQAKA 523
           H CFF  LRD +  +G  R + TG   +A
Sbjct: 391 HVCFFSLLRDAFTSKGEYRMS-TGEMKEA 418


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 217 FCINIRNVYFTRNYI 261
           +C N R +Y+  NYI
Sbjct: 100 YCNNYRKLYYNINYI 114


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 353 YTTFSTMIYLTPLFIKLHTII*TNRFLQHHCFFFFL 460
           YTT  T+ Y T  F  +  +    R L +H F  ++
Sbjct: 187 YTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYI 222


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = -1

Query: 544 RQRCSWLGLCLPTCPGETGEASEQPV 467
           ++RC W+G+  P    +   A  + +
Sbjct: 348 QKRCKWMGIHEPETTSDATSAQTEKI 373


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 92  TLTGQEILLFIHFRHAL*SYKFIHNN 169
           T  G  +  F H  HA  SY  + NN
Sbjct: 466 TPRGAVLARFTHLNHADFSYTIVINN 491


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/26 (23%), Positives = 13/26 (50%)
 Frame = -1

Query: 544 RQRCSWLGLCLPTCPGETGEASEQPV 467
           ++RC W+G+  P    +   A  + +
Sbjct: 348 QKRCKWMGIHEPETTSDATSAQTEKI 373


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,690
Number of Sequences: 438
Number of extensions: 2967
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)