Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0938
         (613 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61400.1 68414.m06919 S-locus protein kinase, putative simila...    30   1.1  
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote...    27   9.8  

>At1g61400.1 68414.m06919 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 821

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 149 YKFIHNNSCFTFVFVITLCFDYPSVLILEM 238
           Y+F+ N S  TFVFV T CF   S   LE+
Sbjct: 572 YEFMKNKSLDTFVFVFTRCFCLDSKKRLEI 601


>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
           kinase, putative hypothetical proteins - Arabidopsis
           thaliana
          Length = 719

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 152 KFIHNNSCFTFVFVITLCFDYPSVLILEMYILHVIIFLI 268
           +FI  N   T + +I    D P   +   ++LH+II L+
Sbjct: 2   EFITQNQAITSLSMINTDIDQPKASLRSRFLLHLIICLL 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,192,585
Number of Sequences: 28952
Number of extensions: 170358
Number of successful extensions: 244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)