Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0935
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 29   2.2  
SB_50693| Best HMM Match : C2 (HMM E-Value=0)                          28   5.0  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 303 NYVDLNGTSDQLLKPYPSLKDNFIPDSAKDLPSNKTIISVFRIYIDPCDRLWVMDTGLAD 482
           N  D N     L  P  + ++NF P ++++L SN   +  F+I     ++    +TGL  
Sbjct: 68  NKYDKNSMRLNLRPPGMTGQENFRPSASRNLFSNSPDLGTFKIVTPDLEKFIGNNTGLTP 127

Query: 483 IWGAGNQIVRPS 518
               GN I  PS
Sbjct: 128 ---KGNPIQLPS 136


>SB_50693| Best HMM Match : C2 (HMM E-Value=0)
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = -2

Query: 114 QLHMMPLLKQWQTPVVSSFMK-EC---TMKNTGRVSLRP 10
           QL   PL++QW T +V+  +K  C   T+K TG V  RP
Sbjct: 304 QLMDFPLVRQWVTQLVNDTLKLSCGALTLKITGGVQGRP 342


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 495  GNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDS 596
            GN ++R + ++FDL+ D L  R F +L D  +DS
Sbjct: 1547 GN-VIRLTFIMFDLEDDPLCARDFLELMDGGQDS 1579


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 351 DTALEVDLRYHSNQHNSTKKRHHSSTWAPLQTICF 247
           D  ++ D RY  +QH+ T +R  +  W P QT  F
Sbjct: 439 DKVIQYDARYRGHQHSYTIRR--AIPWPPRQTQSF 471


>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 279 KNGVASSLNYVDLNGTSDQLLKPYPSLKDNFIPDSAKD 392
           K+G  S   Y  L+GT +       SLKD+F  D  KD
Sbjct: 213 KDGKISFAEYAGLDGTGEDNQDSLKSLKDDFNNDLDKD 250


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 351 DTALEVDLRYHSNQHNSTKKRHHSSTWAPLQTICF 247
           D  ++ D RY  +QH+ T +R  +  W P QT  F
Sbjct: 224 DKVIQYDARYRGHQHSYTIRR--AIPWPPRQTQSF 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,021
Number of Sequences: 59808
Number of extensions: 397751
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)