Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0934
         (525 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                      171   4e-43
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                       140   6e-34
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)             132   1e-31
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                      132   1e-31
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)                 87   8e-18
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)                 36   0.020
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)                 36   0.020
SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)                    32   0.33 
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   1.8  
SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)               29   3.1  
SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               27   7.2  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  27   9.5  
SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)                 27   9.5  

>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score =  171 bits (415), Expect = 4e-43
 Identities = 77/88 (87%), Positives = 84/88 (95%)
 Frame = +1

Query: 262 IGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTT 441
           +GTVIGIDLGTTYSCVGV+KNGRVEIIANDQGNRITPSYVAFT++GERLIGD AKNQLTT
Sbjct: 700 VGTVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTEEGERLIGDGAKNQLTT 759

Query: 442 NPENTVFDAKRLIGREWSDQTVQHDVKF 525
           NPENTVFDAKRLIGR W D +VQ+D+KF
Sbjct: 760 NPENTVFDAKRLIGRSWDDTSVQNDLKF 787


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score =  140 bits (339), Expect = 6e-34
 Identities = 65/83 (78%), Positives = 73/83 (87%)
 Frame = +1

Query: 274 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 453
           IGIDLGTTYSCVGV++NG+VEIIANDQGNR TPSYV FT D ERL+GDAAKNQ+  NPEN
Sbjct: 7   IGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVGFT-DTERLVGDAAKNQVALNPEN 65

Query: 454 TVFDAKRLIGREWSDQTVQHDVK 522
           T+FDAKRLIGR + D TVQ D+K
Sbjct: 66  TIFDAKRLIGRRYDDATVQSDMK 88


>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score =  132 bits (320), Expect = 1e-31
 Identities = 62/83 (74%), Positives = 72/83 (86%)
 Frame = +1

Query: 274 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 453
           IGIDLGTTYSCVGV+++G+VEIIANDQGNR TPSYVAFT D ERL+GDAAKNQ+  NP N
Sbjct: 7   IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DEERLVGDAAKNQVAMNPTN 65

Query: 454 TVFDAKRLIGREWSDQTVQHDVK 522
           T+FDAKRLIGR + D  V+ D+K
Sbjct: 66  TIFDAKRLIGRRFDDPGVKDDMK 88


>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score =  132 bits (320), Expect = 1e-31
 Identities = 62/82 (75%), Positives = 72/82 (87%)
 Frame = +1

Query: 274 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 453
           +GIDLGTTYSCVGV+++G+VEIIANDQGNR TPSYVAF+ D ERLIGDAAKNQ+  NPEN
Sbjct: 7   VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFS-DTERLIGDAAKNQVAMNPEN 65

Query: 454 TVFDAKRLIGREWSDQTVQHDV 519
           TVFDAKRLIGR++ D  V  D+
Sbjct: 66  TVFDAKRLIGRKFDDPVVARDM 87


>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
          Length = 437

 Score = 87.0 bits (206), Expect = 8e-18
 Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
 Frame = +1

Query: 271 VIGIDLGTTYSCVGVYK--NGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 444
           +IGIDLGTTYSCVG Y+  +GR++I +++  +++ PS VAFT  G  L+G+ A +Q   N
Sbjct: 33  IIGIDLGTTYSCVGAYQAISGRIDIFSDENDDKVVPSLVAFTDKGV-LVGEKALSQAEIN 91

Query: 445 PENTVFDAKRLIGREWSDQ 501
           P+NT++DAKR IG+ ++ Q
Sbjct: 92  PKNTIYDAKRFIGKTFTKQ 110


>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 22/55 (40%), Positives = 35/55 (63%)
 Frame = +1

Query: 268 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQ 432
           +V+G D+G     + V + G +E +AN+  +R TPS+V+   D +RLIG + KNQ
Sbjct: 2   SVVGFDVGNQSCYIAVARGGGIETVANEFSDRCTPSFVSL-GDKQRLIGTSGKNQ 55



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 433 LTTNPENTVFDAKRLIGREWSDQTVQHDV 519
           + +N +NT+   KR IGR++SD  VQ ++
Sbjct: 115 MISNLKNTISQFKRFIGRKFSDPAVQKEI 143


>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
          Length = 592

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = +1

Query: 322 NGRVEIIANDQGNRITPSYVAFTQDGERLI 411
           +G   IIAND G+R+TP+ VAF+ D E+LI
Sbjct: 82  DGNTTIIANDAGDRVTPAMVAFS-DTEKLI 110


>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
          Length = 212

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +1

Query: 334 EIIANDQGNRITPSYVAFTQDGERL 408
           ++I N +G+R TPS VAFT +GERL
Sbjct: 7   KVIENAEGSRTTPSVVAFTPEGERL 31


>SB_8282| Best HMM Match : NHL (HMM E-Value=9.2e-23)
          Length = 877

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 307 VGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPENTVFDA 468
           V  Y N +V + A D G+++T  Y A T +G+ L+   A + +T N +  V  A
Sbjct: 728 VSDYHNRKVHVFARDDGSQVT-CYTAVTDEGDGLLN--APSGITVNSKGEVIVA 778


>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1264

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 509 CTVWSLHSRPIRRLASKTVFSGLVVSWFLAASPI 408
           C VW +    +RRL    VF G+++ + +AAS I
Sbjct: 387 CAVWKVMRYKVRRLVEHKVFEGIIL-FLIAASSI 419


>SB_42147| Best HMM Match : Thioredoxin (HMM E-Value=0.3)
          Length = 787

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 491 HSRPIRRLASKTVFSGLVVSWF 426
           H   I RL+S+ VFSG V+ WF
Sbjct: 114 HKILIDRLSSRFVFSGTVIQWF 135


>SB_59805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = -3

Query: 172 KIYRLKDSEINKNLNKIIFTATIRSL*NAFIKHLRIQTVHQYFSFNPRARAP 17
           +++ ++ +++ +++ ++   A +R L N FIK  R+  VH Y     +++ P
Sbjct: 169 RLFEMEATDLFRDIQELPRNAALRKL-NDFIKRARLAKVHAYIISELKSQMP 219


>SB_21445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 279 YRFGYHLLMCRCLQKWTCRNHCQ*PGK 359
           Y     +L  RCL + TC  HC  P K
Sbjct: 63  YDIHQEILRARCLNEGTCVEHCDSPKK 89


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 313 HRHMSKWYPNRYRLLCRCPYLSPSCRRHKRPRPPKLAR 200
           HR      PN  R   + P LSP       PRPP  +R
Sbjct: 719 HRRRKGQPPNDVRAAWKTPPLSPIRPAQDNPRPPSASR 756


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 88  AFIKHLRIQTVHQYFSFNPRARAPPPRE 5
           A IK+LR  +   Y   NP  +APPP +
Sbjct: 896 ATIKYLRGISTKTYVEKNPEKKAPPPSD 923


>SB_43971| Best HMM Match : I-set (HMM E-Value=1.7e-09)
          Length = 240

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 455 VFSGLVVSWFLAASPIKRSPS*VKATYEGVMRF 357
           V SG+++ WF   S +  +P+    TY+G + F
Sbjct: 70  VSSGVLMEWFQGRSKVLSTPNDTDTTYKGRVYF 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,615,989
Number of Sequences: 59808
Number of extensions: 334133
Number of successful extensions: 773
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)