Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0932
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   5.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 81  IPKIKYNVPISL*FPRADSCSPGDPLV 1
           IP+I+  VP++L +   +    G+PL+
Sbjct: 77  IPRIQDGVPLTLGYVTREVSIDGNPLI 103


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 3   LVDPPGCRNRHEEIIKILEHYI 68
           + DPP    R EEI K +  YI
Sbjct: 157 MTDPPYSEARFEEIKKEVSSYI 178


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 40 SSCRFLQPGGS 8
          + C FL PGGS
Sbjct: 66 AKCEFLNPGGS 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,306
Number of Sequences: 438
Number of extensions: 2451
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)