Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0930
         (466 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to ...    29   1.2  
At1g06350.1 68414.m00671 fatty acid desaturase family protein si...    29   1.5  
At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to ...    29   1.5  
At5g41180.1 68418.m05005 leucine-rich repeat protein kinase, put...    27   4.7  
At5g41880.1 68418.m05099 DNA primase small subunit family contai...    27   6.2  
At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-contain...    27   6.2  
At1g61080.1 68414.m06877 proline-rich family protein                   27   6.2  

>At2g31360.1 68415.m03831 delta 9 desaturase (ADS2) identical to
           delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from
           [Arabidopsis thaliana]
          Length = 307

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 325 TSVFAIVLFF-LGNFGITAGAHRLWSHNGYKVKLPLEILL 441
           ++++   LF+ +G  GIT   HR  +H  +KV   LE LL
Sbjct: 64  SALWVTFLFYTIGGLGITVSYHRNLAHRSFKVPKWLEYLL 103


>At1g06350.1 68414.m00671 fatty acid desaturase family protein
           similar to delta 9 acyl-lipid desaturase (ADS1)
           GI:2970034 from [Arabidopsis thaliana]
          Length = 300

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 241 VMNVIRFSYLHIAGLYGLYLCFTSAKLATSVFAIVLFFLGNFGITAGAHRLWSHNGYKVK 420
           +++V+R S + I     L   F + K     F +VLF L    IT   HR  SH  +K+ 
Sbjct: 31  LVDVVRASVVVIVHFLCLLAPF-NFKWEALRFGLVLFALTTLSITFSFHRNLSHRSFKIP 89

Query: 421 LPLE 432
             LE
Sbjct: 90  KWLE 93


>At1g06080.1 68414.m00637 delta 9 desaturase (ADS1) identical to
           delta 9 acyl-lipid desaturase (ADS1) GB:BAA25180
           GI:2970034 from [Arabidopsis thaliana]
          Length = 305

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 337 AIVLFFLGNFGITAGAHRLWSHNGYKVKLPLE 432
           A++++ +G  GIT   HR  +H  +KV   LE
Sbjct: 67  ALIVYTVGGLGITVSYHRNLAHRSFKVPKWLE 98


>At5g41180.1 68418.m05005 leucine-rich repeat protein kinase,
           putative contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 664

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 311 QQNWLHRFLLLCYSSLGTLVLQLELIVCGLIMVTKS 418
           +Q WL  F ++  SS+G L L +    C L  + +S
Sbjct: 273 RQTWLRNFEIVTGSSVGLLFLVVMFSACSLCKIKRS 308


>At5g41880.1 68418.m05099 DNA primase small subunit family contains
           Pfam profile: PF01896 DNA primase small subunit
          Length = 407

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 267 IAKTYHVHHYNFVFDGRGLGCNEFF 193
           I   ++VH+    +DG+  GC+E++
Sbjct: 22  IENDFNVHYLRIYYDGKHPGCDEYY 46


>At4g17140.1 68417.m02580 pleckstrin homology (PH) domain-containing
           protein contains Pfam profile PF00169: PH domain
          Length = 1322

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 340 IVLFFLGNFGITAGAHRLWSH 402
           + LFFL + G     HRLW H
Sbjct: 277 LYLFFLTDAGFLRNLHRLWKH 297


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 79  LNNL**VDKIEI*ITKMPPNSVDKTNETEYLKDNHVDYEKLIAPQASPIKHKIV 240
           LN L  +DK+E   TK+    VD ++    L       EKL++P A P   K V
Sbjct: 810 LNQL--LDKVERYFTKIKETMVDISSNCMELALKEKRDEKLVSPDAKPSLKKTV 861


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,264,672
Number of Sequences: 28952
Number of extensions: 169769
Number of successful extensions: 371
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)