Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   3.1  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   7.2  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.5  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.5  

>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 378 SEFIAIIIVLSTIIFHSVMKNYTKQWFAYCQTYITNHD 265
           S F+A  + L  I+     KN  +QW  Y  T ++N D
Sbjct: 250 SAFVAETMTLCCIVTIFYDKNVNRQWKQYILTSVSNMD 287


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 36  SLNPIQNLIRKLSQSLSAISVPKIELPRKASARYKRHRQMGDDLHRRLEIDQA 194
           +L   ++ +R +  + + +S   I  P K  A YK + Q    L   LE++++
Sbjct: 156 ALRTTEDRLRSMEMAYAQLSAKVIPSPSKRPANYKFYEQRIAMLEESLEVERS 208


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 308 FV*FFITLWNIMVDNTIIIAINSELLLVKTSHFTTRSCNFEFSC 439
           F+  F+TLWN  +  +I+ ++N   +      + ++     F C
Sbjct: 207 FLMIFLTLWNCFIPYSILFSMNWSAMFQVVGAYLSQIWIITFIC 250


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 210 DLSFLVPDRFLN-VDVGRRPSADASYIWPKLFSEARFSAPILRTSF 76
           DLSF  P    N +D G R    A+Y+W    +E  +     R SF
Sbjct: 107 DLSFDAPHGAKNDIDEGIRKLRCAAYLWQAFTAECMYRNGYGRRSF 152


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 348  STIIFHSVMKNYTKQWFAYCQTYITNHDIAYYPSEVLTNADIE 220
            S  +F  + KN++ Q       Y  + DI+++PS+   ++ +E
Sbjct: 1423 SQSLFVRIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLE 1465


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 487 LTDLITLVKLTTSILHTRKLK 425
           +T LI +V +TTSIL  R LK
Sbjct: 104 ITFLIAIVGITTSILKKRMLK 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,657
Number of Sequences: 5004
Number of extensions: 41794
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)