Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710...    31   0.78 
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262...    29   1.8  
05_07_0069 + 27475072-27475136,27475237-27475465,27475532-274756...    29   2.4  
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    27   7.2  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    27   9.6  

>01_01_0903 -
           7103091-7103120,7104092-7104651,7105208-7105328,
           7105545-7106567
          Length = 577

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 146 SADGRRPTSTFRNRSGTKNDRSMVISIS 229
           S+D +RP ST+RNR G K+ +S   S S
Sbjct: 256 SSDKQRPHSTYRNREGRKDTKSKTGSAS 283


>01_05_0705 +
           24424457-24424948,24425520-24425624,24426097-24426207,
           24426675-24426857,24427066-24427192,24427336-24427397,
           24427638-24427724,24428703-24428789,24429210-24429323,
           24429507-24429635,24429834-24429896,24430333-24430494,
           24430611-24430729,24430786-24431794
          Length = 949

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 270 HDIAYYPSEVLTNADIEITIDLSFLVPDRFLNVDVGRRPSADA 142
           + + Y  SE  +N   ++ +DL      R L+VDV  RPSA A
Sbjct: 300 NSLTYLTSEAFSNIPADLVVDLQ-----RMLSVDVASRPSAMA 337


>05_07_0069 +
           27475072-27475136,27475237-27475465,27475532-27475630,
           27476172-27476287,27476670-27476757
          Length = 198

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 5   GGGHEGTAYRIPQSHTKLDTEAQSK 79
           G G EG    +PQ H K   E+QS+
Sbjct: 112 GAGQEGPRLHVPQQHLKASKESQSR 136


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 66  KLSQSLSAISVPKIELPRKASARYKRHRQMGDDLHRRLEIDQALRMTG 209
           +L ++   I    IE+P  A++ Y R + M     R LEI +     G
Sbjct: 635 ELLEATHLICAMLIEVPNMAASTYDRRKSMNRTFRRLLEISERQTFVG 682


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 54  NLIRKLSQSLSAISVPKIELPRKASARY 137
           NL+R+  ++L  ++ P IE+P  A+  Y
Sbjct: 78  NLLREAEEALCPVNEPNIEVPSGATGHY 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,715
Number of Sequences: 37544
Number of extensions: 246697
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)