Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_48395| Best HMM Match : MAM (HMM E-Value=0)                         28   4.2  
SB_39153| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)                  27   9.8  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     27   9.8  
SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)                     27   9.8  

>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1569

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = +2

Query: 26   AYRIPQSHTKLDTEAQSKLVRNIGAENRASEKSF-------GQI*EASADGRRPTSTFRN 184
            A  +  + T ++ EA  + V+   A  +AS K          Q  EA A+G +PTST R 
Sbjct: 1356 ATEVEDAQTAIEEEAPVEEVQPKRATGKASAKPTRSTRGKRSQTDEAPAEGEKPTSTRRG 1415

Query: 185  RSGTKNDRSMVI 220
            R   K D S+ +
Sbjct: 1416 RKAAKKDISIEV 1427


>SB_28911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -3

Query: 243 VLTNADIEITIDLSFLVPDRFLNVDVGR 160
           V  N DI +T+D  FLV DRFL   V R
Sbjct: 631 VAPNDDIALTLDSEFLVGDRFLVAPVLR 658


>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
          Length = 901

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 104 FRHRYCGQA-LTELPYQVLYGIEGYDKRCPRA 12
           +R R+C    LTE P   +YGIE    +CP+A
Sbjct: 154 YRQRFCTNTNLTECPGVNMYGIETDMVQCPQA 185


>SB_39153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 279 ITNHDIAYYPSEVLTNADIEITIDLSFL--VPDRFLNVDVGRRPSAD 145
           + N    +  +EV   AD EI +DLS +  +PD  L V+ G + +AD
Sbjct: 30  LDNEVYRFISNEVFFYAD-EIEVDLSDVMSIPDPLLKVEAGLKGTAD 75


>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
          Length = 725

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 441 IHENSKLHDRVVKCEVLTNKSSEFIAIIIVLSTIIFHSVMKNYTKQWFAYCQTYIT 274
           + E ++L   ++ C V      E+I +I+ L   + H VM    +   A  QT IT
Sbjct: 319 VSELARLLQLILGCAVNCEDKQEYIQVIMQLEETVQHVVMTAIQELMTARDQTQIT 374


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 240 LTNADIEITIDLSFLVPDRFLNVDVGRRPSADASYIWPKLFSEARFSAPILR 85
           L N D +  + L   + D FL+ D+GR   A     +P+L    + + P+LR
Sbjct: 262 LQNIDKDDLVSLGKAI-DGFLSSDIGRLSQAVVFAAFPELAMAKQVAMPVLR 312


>SB_21927| Best HMM Match : SH3_1 (HMM E-Value=8.6)
          Length = 446

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 240 LTNADIEITIDLSFLVPDRFLNVDVGRRPSADASYIWPKLFSEARFSAPILR 85
           L N D +  + L   + D FL+ D+GR   A     +P+L    + + P+LR
Sbjct: 72  LQNIDKDDLVSLGKAI-DGFLSSDIGRLSQAVVFAAFPELAMAKQVAMPVLR 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,698,098
Number of Sequences: 59808
Number of extensions: 305088
Number of successful extensions: 641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)