Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical p...    28   3.7  
U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yea...    28   4.9  
U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    27   8.6  
U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine re...    27   8.6  
AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine re...    27   8.6  

>Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical
           protein F22D6.8 protein.
          Length = 100

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 267 DIAYYPSEVLTNADIEITIDLSFLVP 190
           D+ Y+ S V T   I++ IDL F+VP
Sbjct: 60  DVKYFLSLVFTTKMIQMLIDLKFIVP 85


>U00048-10|AAB53823.2|  852|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 16 protein.
          Length = 852

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -3

Query: 294 YCQTYITNHDIAYYPS-EVLTNADIEITIDLSFLVPDRFLNVDVGRRPSADASYIWPKLF 118
           +C   IT+HDIA   +   + N+ + + +  S +V   F+NV   R+P  D   I+ K+ 
Sbjct: 260 FCTVEITDHDIAKCINFGWVGNSAVFVQMSPSLIV---FVNVSARRKP-GDEVQIYEKMT 315

Query: 117 SEARFS 100
           + A+ S
Sbjct: 316 ANAKIS 321


>U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical
           protein T25E4.2 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 369 IAIIIVLSTIIFHSVMKNYTKQWFAYCQTY 280
           IAII+ +  IIFH + KN+T  +F +   Y
Sbjct: 402 IAIIVFILEIIFHRMTKNFT--FFGHSYNY 429


>Z68108-2|CAA92135.1|  406|Caenorhabditis elegans Hypothetical
           protein T05A10.3 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 155 HLPMPLISGRSFSRKLDFRHRY 90
           H P+ L  G+SFSR ++ RH Y
Sbjct: 378 HYPV-LTQGQSFSRSIELRHEY 398


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 229 RVCQNFAWVISYVMICNIRLAISKPLLC 312
           R C  F W+++  ++C I + +S P++C
Sbjct: 96  RRCSRFVWLLASSLLCIISV-VSAPIMC 122


>U13645-7|AAA20989.2|  598|Caenorhabditis elegans Hypothetical
           protein C05D10.3 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = -3

Query: 375 EFIAIIIVLSTIIF--HSVMKNYTKQWFAYCQTY-ITNH--DIAYYPSEVLTNADIEITI 211
           ++I + I+ +TI++    +  N+    FA   T  ITN    I+Y  + +  N D+ +TI
Sbjct: 423 QYIILPILYNTIVYWMSGLYPNFWNYCFASLVTILITNVAISISYAVATIFANTDVAMTI 482

Query: 210 DLSFLVP 190
              F+VP
Sbjct: 483 LPIFVVP 489


>AF101307-1|AAK84528.2|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein31 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 187 IRH*E*QVYGNFNIRVCQNFAWVISYVMICNIRLAISKPLLCVIFHNT 330
           I+H   +++   N  V +N+ WV S +  C     ISK   C  F++T
Sbjct: 107 IQHRYERIFSKTNTMVLRNYLWVFS-IAFCTCWYEISK---CFFFYDT 150


>AF022983-8|AAB69948.3|  294|Caenorhabditis elegans Serpentine
           receptor, class x protein32 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 187 IRH*E*QVYGNFNIRVCQNFAWVISYVMICNIRLAISKPLLCVIFHNT 330
           I+H   +++   N  V +N+ WV S +  C     ISK   C  F++T
Sbjct: 107 IQHRYERIFSKTNTMVLRNYLWVFS-IAFCTCWYEISK---CFFFYDT 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,565
Number of Sequences: 27780
Number of extensions: 227659
Number of successful extensions: 575
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)