Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +2

Query: 23   TAYRIPQSHTKLDTEAQSKLVRNIGAENRASEKSFGQI*EASADGRRPTSTFRNR 187
            T   I Q+H ++  +     + ++  ENR  E  FG     +    R   T RNR
Sbjct: 1084 TLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDIFGITLRTAEVHNRSRETARNR 1138


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 110 LDFRHRYCGQALTELPYQVLYGIEGYD 30
           +D R+  CG A+  +     YG+  YD
Sbjct: 313 VDIRNEDCGSAIAYVSDVFRYGLLIYD 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,241
Number of Sequences: 438
Number of extensions: 2658
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)