Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0929
         (539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54540.1 68414.m06220 hypothetical protein                          30   0.86 
At1g78490.1 68414.m09149 cytochrome P450 family protein similar ...    28   4.6  
At5g03160.1 68418.m00264 DNAJ heat shock N-terminal domain-conta...    27   8.0  
At3g53240.1 68416.m05868 leucine-rich repeat family protein cont...    27   8.0  
At1g77720.1 68414.m09049 protein kinase family protein contains ...    27   8.0  

>At1g54540.1 68414.m06220 hypothetical protein
          Length = 239

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 235 CQNFAWVISYVMICNIRLAISKPLLCVIFH 324
           C+ F WV+S ++I  I LAI+  ++  +FH
Sbjct: 51  CKIFCWVLSLLVIALIALAIAVAVVYFVFH 80


>At1g78490.1 68414.m09149 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 479

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 26  AYRIPQSHTKLDTEAQSKLVRNIGAENRASEKSF 127
           AY  P+  + L  E QSKL+ N+ A N    KSF
Sbjct: 182 AYMTPKLISNLKPETQSKLIDNLNAFNLDWFKSF 215


>At5g03160.1 68418.m00264 DNAJ heat shock N-terminal
           domain-containing protein similar to P58 protein, Bos
           primigenius taurus, PIR:A56534; similar to p58
           (GI:1353270) {Homo sapiens}; contains Pfam PF00226: DnaJ
           domain; contains Pfam PF00515: TPR Domain
          Length = 482

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 57  LIRKLSQSLSAISVPKIELPRKASA--RYKRHRQMGDDLHRRLEIDQAL 197
           L++ L  +L   SV   EL  +AS   + KR+    DDL+  +E D AL
Sbjct: 35  LLQPLVSALDGQSVDAAELFERASQSIKVKRYSDALDDLNAAIEADPAL 83


>At3g53240.1 68416.m05868 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 891

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 141 SYIWPKLFSEARFSAPILRTSFD*ASVSSFVWD 43
           S  W KL S  RFS PI+R S D  S+ + + D
Sbjct: 423 SLSWLKL-SHNRFSGPIIRKSSDETSLITLIMD 454


>At1g77720.1 68414.m09049 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 777

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 39  LNPIQNLIRKLSQSLSAISVPKIELPRKASARYKRHRQM 155
           + PI NL    S S S+ S P  EL R   A +KRHR +
Sbjct: 19  VRPILNLETTSSSSSSSSSSP--ELLRHLQAAFKRHRPL 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,864,340
Number of Sequences: 28952
Number of extensions: 209874
Number of successful extensions: 507
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)