Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0925
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                28   6.7  
SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)                   28   6.7  
SB_35410| Best HMM Match : Mo-co_dimer (HMM E-Value=0)                 27   8.8  
SB_10593| Best HMM Match : SDF (HMM E-Value=0)                         27   8.8  

>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 150 MSKSSCFFLISNANCSIEIRISKTKNY 70
           M+KSS  F I+ +NC +E+R+ K   +
Sbjct: 1   MAKSSRTFTIAISNCYVEVRLRKLNGF 27


>SB_30671| Best HMM Match : rve (HMM E-Value=6.2e-32)
          Length = 965

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 270 GVLHTHRLVSSKWFFPRWAQALIGTAKICYASEIS 374
           G+  T  L+  K++FPR  + +     IC++ ++S
Sbjct: 605 GITKTKELLRRKYWFPRMNKRIEDIVSICFSCQVS 639


>SB_35410| Best HMM Match : Mo-co_dimer (HMM E-Value=0)
          Length = 141

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 471 HPSDSSKTLLKQEAVVTVQGVPLSSYMEDLLTNKISLNAGK 593
           HP +  +TLL++E  VT+ G   S     ++   +SL+ GK
Sbjct: 22  HPEEG-ETLLREEEEVTISGYAWSGGGRGIVRVDVSLDGGK 61


>SB_10593| Best HMM Match : SDF (HMM E-Value=0)
          Length = 629

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 459 RYTPHPSDSSKTLLKQEAVVTVQGVP 536
           RYTPH +DS+  +    A   V GVP
Sbjct: 343 RYTPHGTDSAHAVCSMGACGIVPGVP 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,233,625
Number of Sequences: 59808
Number of extensions: 402223
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)