Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0923
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm rece...    29   2.4  

>Z81544-2|CAB04434.1|  342|Caenorhabditis elegans Hypothetical
           protein F49C5.6 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 222 RWHMFTKLITHSFS-ITFIVNEYIFFMLLTKVLKQ 121
           +W    K++  S + ++ ++N ++ FM+LTK  KQ
Sbjct: 5   QWSYLLKIVQDSSACVSLVINSFLIFMILTKSPKQ 39


>AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 225 protein.
          Length = 347

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 219 WHMFTKLITHSFSI-TFIVNEYIFFMLLTKVLKQ 121
           W    +L+ HS ++ + I+N ++ +++LTK  KQ
Sbjct: 6   WSALLQLVQHSTAVFSIIINTFLIYLILTKSPKQ 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,554
Number of Sequences: 27780
Number of extensions: 179560
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)