Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0920
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 40 0.002
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 38 0.004
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 38 0.004
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 37 0.012
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 36 0.015
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 35 0.036
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 34 0.062
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 34 0.062
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 34 0.062
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 34 0.062
At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak ... 34 0.082
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 33 0.19
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 31 0.58
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 28 4.1
At3g10915.2 68416.m01315 reticulon family protein low similarity... 28 5.4
At3g10915.1 68416.m01314 reticulon family protein low similarity... 28 5.4
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW L+ +G CFN +TL + + LFT+P AY+
Sbjct: 201 LWVLSILGGCFNFLTLAYIALVLLFTVPLAYD 232
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW L+ +G+C+N +TL + LFT+P YE
Sbjct: 180 LWVLSIIGSCYNFLTLFYTATVLLFTIPVLYE 211
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 434 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P YE
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYE 211
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 36.7 bits (81), Expect = 0.012
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 434 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LR + L DL L LW ++ VG FN +TL+ + ++ L T+P YE
Sbjct: 161 LRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYE 211
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 36.3 bits (80), Expect = 0.015
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 473 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
L+ ++LW ++YVG N +TL+ +G + + P YE
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYE 165
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 35.1 bits (77), Expect = 0.036
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW L+ VG+ N +TLI + + LFT+P YE
Sbjct: 176 LWVLSKVGSSCNFLTLIYIATVLLFTIPVLYE 207
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 34.3 bits (75), Expect = 0.062
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 434 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LR + D+ L LW L+ +G C++ +TL + + LFT+P Y+
Sbjct: 178 LREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYD 228
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 34.3 bits (75), Expect = 0.062
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW VG+C N +T++ +G++ T+P YE
Sbjct: 193 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 224
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 34.3 bits (75), Expect = 0.062
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW VG+C N +T++ +G++ T+P YE
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 34.3 bits (75), Expect = 0.062
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 491 LWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LW VG+C N +T++ +G++ T+P YE
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYE 204
>At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak
similarity to RTN2-C [Homo sapiens] GI:3435090; contains
Pfam profile PF02453: Reticulon
Length = 225
Score = 33.9 bits (74), Expect = 0.082
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 485 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEM 589
+ L+ ++ +G FN + L+ +G++++ TLP YEM
Sbjct: 149 ISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEM 183
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 437 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
R +++ + + V+LW +++VG N +T++ LG + +P YE
Sbjct: 108 REIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYE 157
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 31.1 bits (67), Expect = 0.58
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +2
Query: 434 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYE 586
LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P YE
Sbjct: 158 LRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYE 208
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 93 PSQHPRYAPSSTPWSR*ST 149
PS++ +Y PSS+PWS ST
Sbjct: 157 PSKNSKYIPSSSPWSCPST 175
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 476 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 583
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 183
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 476 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAY 583
K + LW L+ +G+ + TL+ +G I T+P Y
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALY 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,600
Number of Sequences: 28952
Number of extensions: 110138
Number of successful extensions: 440
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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