Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0918
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)                   30   1.4  
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                27   7.2  
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)                   27   9.5  
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     27   9.5  
SB_12797| Best HMM Match : HECT (HMM E-Value=0)                        27   9.5  

>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
          Length = 1161

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 418 EIYEGFLAGQN*TCYKCLRWY 480
           +I +G L GQ   C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137


>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1175

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 418 EIYEGFLAGQN*TCYKCLRWY 480
           +I +G L GQ   C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 361  EADYWEQMKAKYDPKDEFKEIY-EGFLAG 444
            +AD W  + A YD +D F +IY  G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991


>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 221

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 226 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 402
           D  +C+ DG+ +   +K   Q A  K +  +K   R++   +   E     + K K+D P
Sbjct: 95  DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154

Query: 403 KD 408
            D
Sbjct: 155 MD 156


>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 24/107 (22%), Positives = 43/107 (40%)
 Frame = +1

Query: 163 IDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIV 342
           +  D  LE+   + PY  C+ ++      G    + ++   Q   AK   K+  S  +  
Sbjct: 541 VPCDRKLESAFAINPYPTCLYEKALAVRLGLR-DSRVQVWFQNRRAK--SKRNRSGCQSS 597

Query: 343 KHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRWYN 483
            +  Q+E DY+    + Y PK+           G+   CY+ L  Y+
Sbjct: 598 TYRGQNEGDYFSPTASDYSPKNSEYHTNTSDCFGEARECYEELSTYD 644


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +1

Query: 136 EKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDK 315
           EK  D+ D +  + +++N +LL  ++K   D+     DG    +H  D  +++   C D 
Sbjct: 165 EKSFDQEDQLRHEIVMKN-ELLQKFLK---DQEDLYYDG----SHTDDEQRSSDGSCKDD 216

Query: 316 QKVSARKIVKHIKQHEAD-YWEQMKAKYDPKDE 411
              + R+  K ++QH +    E +K K D   E
Sbjct: 217 SITNLREKCKLLEQHNSHLILEALKIKEDTASE 249


>SB_37501| Best HMM Match : SCP (HMM E-Value=1.2e-19)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 223 IRILCKEPVAFGSQEFXXXXXXXXXXXTSRQSISPPRIKVQQ 98
           I+ LCK P  F S  F            S ++I+PP + V+Q
Sbjct: 243 IKQLCKTPEVFFSSCFIHNYCPLVFMNESGKNITPPNLPVEQ 284


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 281 ECRQRVRSVQINRRCQPERSLNTL--SSTKLITGSR 382
           E R  VRS++ NR C P  S  TL  SS   +T  R
Sbjct: 33  EARSAVRSLKTNRPCTPTDSKRTLFGSSPAKVTEGR 68


>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
          Length = 749

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +1

Query: 217 CVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQ 357
           CVL++ +  P+   L  H ++ + +    C D+   S +K+V  I Q
Sbjct: 118 CVLNQPKSKPENSHLNNHAEESLLSTLKTCRDEG--SFKKLVHSIGQ 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,179
Number of Sequences: 59808
Number of extensions: 322513
Number of successful extensions: 791
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)