Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0918
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At3g24260.1 68416.m03047 hypothetical protein                          29   1.5  
At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein si...    28   4.5  
At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    27   6.0  
At1g06280.1 68414.m00664 LOB domain family protein / lateral org...    27   6.0  
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   7.9  
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    27   7.9  

>At5g40410.1 68418.m04901 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1155

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 274 KDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGF 435
           +  M TACA+C D   V ARK+ + + + +   W  M + Y    E +E    F
Sbjct: 177 RTAMVTACARCGD--VVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF 228


>At3g24260.1 68416.m03047 hypothetical protein
          Length = 374

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
 Frame = +1

Query: 148 DKYDNIDVDEILENRKLLVPYIKCVL----DEGRCTPDGKELKAHIKDGMQTACAKCTDK 315
           D  +  + + IL N   ++P I+ V     D  R   D  E K  + + ++    + T  
Sbjct: 53  DHDEKPEENPILLNEPKMIPRIRIVYKPKDDVERKMKDRLEAKQKLTELLKAIEERLTRS 112

Query: 316 QKVSARKIVKHIKQHEADYWEQMKAKYDPKDEFKEIYEGFL 438
           +      + K  K H  DY + +K+     D++K +Y+ F+
Sbjct: 113 ELRVYTCLCKDFKSHRIDYSQFVKSLQRLIDKYKNLYQRFV 153


>At5g55180.1 68418.m06879 glycosyl hydrolase family 17 protein
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 460

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 184 ENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 303
           +N++ +VP    ++ +  C  +GK  K  +++G+  AC +
Sbjct: 355 DNKEKVVPVKPSLVGQTWCVANGKTTKEKLQEGLDYACGE 394


>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 253 KELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEA 366
           K  + H+K    + C KC  K K   R IV++I +  A
Sbjct: 12  KHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAA 49


>At1g06280.1 68414.m00664 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD2) nearly identical
           to SP|Q9LNB9 Putative LOB domain protein 2 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 206

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 3   SSTRVTLNLSQVSG*HRFCVD*NHCRHEVSNNC 101
           ++T +T N+S  S  H+ C    H R + +N C
Sbjct: 7   NNTSITSNISNNSSSHQACASCKHQRKKCNNEC 39


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +1

Query: 124 LSIAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAK 303
           L+ + +   K   +D D    N K+   Y++ V +EG C    +E     K+ +Q    +
Sbjct: 66  LATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKE-LQCDLVE 124

Query: 304 CTDKQKVSARKIVKH 348
                K    KIVK+
Sbjct: 125 VQRDAKPPVCKIVKY 139


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 48  HRFCVD*NHCRHEVSNNCCTFIRGGLIDCR 137
           HR C     C +E+  NCC  IRGG +  R
Sbjct: 333 HRSCPK---CSYELCLNCCQEIRGGWLSDR 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,595
Number of Sequences: 28952
Number of extensions: 222628
Number of successful extensions: 578
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)