Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0916
         (306 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1U5I9 Cluster: Cobyric acid synthase CobQ; n=1; Marino...    33   1.2  
UniRef50_A4G8W0 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  

>UniRef50_A1U5I9 Cluster: Cobyric acid synthase CobQ; n=1;
           Marinobacter aquaeolei VT8|Rep: Cobyric acid synthase
           CobQ - Marinobacter aquaeolei (strain ATCC 700491 / DSM
           11845 / VT8)(Marinobacter hydrocarbonoclasticus (strain
           DSM 11845))
          Length = 380

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 11  SARGKNIYTNIIKRKDLFVCLFRIGSETTGP 103
           SAR K+ Y +II   D F+CL   GS+T  P
Sbjct: 316 SARAKSQYVDIIGSADRFICLADTGSDTRAP 346


>UniRef50_A4G8W0 Cluster: Putative uncharacterized protein; n=1;
           Herminiimonas arsenicoxydans|Rep: Putative
           uncharacterized protein - Herminiimonas arsenicoxydans
          Length = 387

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 79  NRLRNYWTDLKNSISIRSRHCP 144
           N  RNY   +K+ + +R+RHCP
Sbjct: 283 NNKRNYLNAIKSQLQLRARHCP 304


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,032,174
Number of Sequences: 1657284
Number of extensions: 2639341
Number of successful extensions: 4560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4560
length of database: 575,637,011
effective HSP length: 78
effective length of database: 446,368,859
effective search space used: 10266483757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)