Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0915
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   3.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   6.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   6.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   8.4  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 230 NILRQQTTLLQLNVHSSQIIINQEKTNIL 144
           +ILRQ+      N+HS ++I  +EK+++L
Sbjct: 172 HILRQRVIYNVENIHSRKLISTREKSSLL 200


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 251  IDLIFQKNILRQQTTLLQLNVHSSQIIINQEKTNILFKS 135
            +DL  QK+I+    TLL LN  +  ++++  +  +L  S
Sbjct: 1375 VDLASQKHIMSSVITLLSLNSANLGVVVSAFRVVVLLTS 1413


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 497 YKHA*STYLYIRLRKKSDMFNIVFLQDTFLLCTNYKSTFFPFKTPQAPLADGRRN 333
           YK + +  +  RLR++  +  I+ + D F L T     ++ FK     L D   N
Sbjct: 164 YKESSTNTVIYRLRRREHLKKIIDIFDQFPLLTKKYWDYYLFKKAFLILEDANLN 218


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 15  QLLFNLGA*PMVLIVYYIQNLIHFLGDLFDIIKNHDVSSSALK*DISFLLIY 170
           ++LF++    M +I+   +  +H    L  II     +SSA    +SFL +Y
Sbjct: 351 RILFSIFMASMSVIIVVSEVFLHTQYSLVGIILQKFTNSSATSIFVSFLFVY 402


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -1

Query: 236 QKNILRQQTTLLQLNVHSSQIIINQEKTNILFKSTR*DIMILNNIKQVP*KV 81
           +KN     T  LQL   +SQ + + ++  I+F+ +R  I  +N +K +  K+
Sbjct: 317 KKNSEEFSTLNLQLESITSQYLFSSKEAEIVFRKSR--IEFMNKLKALQQKL 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,878
Number of Sequences: 5004
Number of extensions: 32661
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)