Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0914
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    27   1.6  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   3.7  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   6.4  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   8.4  
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.4  

>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 159 WGVKKKAHSGPTFLGTALFAPLYAHSN 79
           WG   K HS    L T L A  +AHS+
Sbjct: 108 WGTLNKDHSNAILLHTGLSASSHAHSH 134


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 168 IFLWGVKKKAHSGPTFLGTALFAPLYAHSN 79
           I  W VKK A + P  + T   APL   +N
Sbjct: 335 ILEWSVKKLAWTSPALVLTGFLAPLKKDAN 364


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 392 VLMLLHDMDSTNISQCVKQI*TLFPFPII 306
           +L L+  +DS N+ +  K I TL+ FP +
Sbjct: 162 LLELVLTLDSANLKRIEKSINTLYSFPFM 190


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/55 (23%), Positives = 21/55 (38%)
 Frame = -1

Query: 168 IFLWGVKKKAHSGPTFLGTALFAPLYAHSNIFITYSIHQFYLSKNVFTSNPRARP 4
           + LW +          L  A+F+ L    +IF+  +   F     V+   P  RP
Sbjct: 161 LLLWSIVLAKPEKNMLLSAAIFSALICFKHIFLYVAPAYFVYLLRVYCFTPNFRP 215


>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 94

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 198 HIRNTIIVSIIFLWGVKKKAHSGP 127
           H+   I  S++F W V+KK  S P
Sbjct: 28  HLIGYITCSVLFSWLVRKKVISSP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,166,275
Number of Sequences: 5004
Number of extensions: 45148
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)