Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0910
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821... 66 3e-11
07_03_0571 - 19602755-19603831 62 4e-10
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850... 31 0.52
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805... 29 2.8
01_06_1434 + 37345522-37345926 28 6.4
08_02_0730 - 20472851-20473075,20473332-20474285 27 8.5
05_06_0223 - 26525618-26526112,26526203-26526370,26526649-265274... 27 8.5
03_05_0287 + 22759946-22760836 27 8.5
>10_05_0025 +
8215685-8215716,8215859-8215937,8216340-8216412,
8216712-8216864,8217456-8217569,8217649-8217776,
8219004-8219099,8219479-8219601,8219694-8219810,
8219983-8220104,8220439-8220508
Length = 368
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Frame = +2
Query: 173 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 352
+A+ R+KSV+NIQKIT++MKMV+A+K + + +R + F P D
Sbjct: 60 RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116
Query: 353 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 523
K + VA+TSD+GLCG +++ VSK + S P E+ K + +G+K + L R
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175
Query: 524 HIISVANEIGRLP 562
+I +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188
>07_03_0571 - 19602755-19603831
Length = 358
Score = 61.7 bits (143), Expect = 4e-10
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 13/128 (10%)
Frame = +2
Query: 167 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 343
+L+ + R+ SV+N QKIT++MK+V+AAK RA+ + ++RP+ E V+ Y +
Sbjct: 37 SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96
Query: 344 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 487
ED K V +T +RGLCG+ + V K R+ E ++ V+ VG
Sbjct: 97 EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156
Query: 488 KSRGILQR 511
K R
Sbjct: 157 KGNAYFIR 164
>11_02_0119 -
8502455-8503015,8503311-8504009,8504512-8504571,
8504744-8504800
Length = 458
Score = 31.5 bits (68), Expect = 0.52
Identities = 21/79 (26%), Positives = 35/79 (44%)
Frame = -3
Query: 559 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 380
E ++ SN ++ L ++ D S + LDVL + VAD + + +A+ +
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164
Query: 379 GHSNKQLLGVIFGRCNLSP 323
+ LG I G C SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183
>03_06_0737 +
35879723-35879990,35880105-35880201,35880464-35880591,
35880686-35880767,35880855-35880918,35880930-35881022,
35881120-35881178,35881391-35881826,35882050-35882120,
35882201-35882351
Length = 482
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -1
Query: 450 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 325
GSL+R R++ PH S I + C+GSS G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381
>01_06_1434 + 37345522-37345926
Length = 134
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -2
Query: 134 PPRLGCRHPVRSVPTFCKFYGCLSVKFTSRRKNVAGLVPNSCS 6
PP CR V C YG L VK V GL+P S S
Sbjct: 82 PPETKCRPLVNRPENICCCYGGLPVKAIQAVYTVHGLMPVSGS 124
>08_02_0730 - 20472851-20473075,20473332-20474285
Length = 392
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 538 NTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYT 413
++ DV+ + SL+D A FI H L + + + + +H +T
Sbjct: 346 DSQDVVPIDSLEDEALFIGHNGTLCLSTKDYPALLPNHVYFT 387
>05_06_0223 -
26525618-26526112,26526203-26526370,26526649-26527473,
26527898-26528004,26529701-26529767
Length = 553
Score = 27.5 bits (58), Expect = 8.5
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Frame = -3
Query: 475 DHLDVLSTRFAETVADHF---------GYTSVYSSAQTSVR---GHSNKQLLGV-IFGRC 335
D+L ++S A V D F + SV T++R GH +++L V I G C
Sbjct: 369 DYLSLVSVLHASPVLDTFILSVQQGGMKHDSVSGDTTTNLRTMPGHKHERLKEVMIIGFC 428
Query: 334 NLSPFIELYCTFTIGTSSFQVTLSTGVFSS*HHLHGL 224
+ + +EL C T+S + T++ H L +
Sbjct: 429 SATSMVELTCHILENTTSLE-TITLDAVCDVHDLENI 464
>03_05_0287 + 22759946-22760836
Length = 296
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 260 RAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGL 394
R+ DLK P+ G + ERA + ++DP +FV D G+
Sbjct: 223 RSVIDLKPVLPWPIGKPKGKERACLAVVDEDPDVIFVGTEEDDGV 267
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,509,502
Number of Sequences: 37544
Number of extensions: 415464
Number of successful extensions: 1167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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