SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0909
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    36   0.015
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178...    33   0.18 
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    32   0.31 
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    32   0.31 
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    31   0.42 
10_08_0418 - 17779499-17780952,17781177-17782017                       30   1.3  
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553...    30   1.3  
12_02_0743 - 22701228-22701689                                         29   1.7  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 29   2.2  
04_04_1324 + 32659752-32661972,32662067-32662761                       29   2.2  
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744...    29   2.2  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    29   2.2  
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    28   3.9  
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209...    28   3.9  
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985...    28   3.9  
12_02_0995 + 25104303-25104486,25105164-25105275,25106466-251065...    27   6.8  
11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    27   6.8  
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    27   6.8  
07_01_0957 + 8037825-8038199,8038775-8038948                           27   6.8  
04_03_0385 + 15239611-15239988                                         27   6.8  
04_03_0338 + 14623636-14624013                                         27   6.8  
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199...    27   8.9  
01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675     27   8.9  

>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 23/90 (25%), Positives = 47/90 (52%)
 Frame = +3

Query: 204 GSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYI 383
           G   +   DD   S  + +K     +D+    +  +TH ++S  +HSS + V S TH++ 
Sbjct: 429 GEHKVNDDDDGSLSMGSEQKRKECDEDSLVDESMCKTHEQKSKDDHSSPEDV-SKTHEFD 487

Query: 384 STSEDINNRTTSEDINDRTISQKRPESTSS 473
           ST ++I   +++ D N++   + + + T+S
Sbjct: 488 STKDNI---SSAVDGNEKHEFESKKDDTNS 514


>03_05_0226 -
           22115285-22115404,22115477-22116661,22117037-22117861,
           22118029-22118106,22118370-22118420,22118510-22118581,
           22118666-22118667,22119453-22119557,22119668-22119749,
           22120178-22120227,22120514-22120567,22121084-22121164,
           22121567-22121656,22121884-22121964,22122304-22122544
          Length = 1038

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 150 EIIREDSYKSSEGVKKIVGSKIITTRDDN--VKSQFNNRKTTAIHQDNKTFSTQSETHTK 323
           ++IR++S   S  +++++GS  I   + N  VKS+  ++  T +  + +    +  T   
Sbjct: 99  KVIRKESRTDSSSIEQVIGSSSIQEMETNEQVKSKDTSKDMTQVPANAEGIHKEYTTKVN 158

Query: 324 QSHTEHSSIKHVHSGTHKYISTSEDIN 404
           +  +   +  +  SG    + T +D+N
Sbjct: 159 RQESRTGNKDNGQSGRSISLDTKKDVN 185


>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = +3

Query: 276 HQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSE-DINNRTTSEDINDRTISQK 452
           H++ K   +        S ++H + +   S  H   S S+ D   +TT    NDR   +K
Sbjct: 300 HKNAKCKKSSRHDSESDSESDHKNARREKSSRHDSESDSDGDYGKKTTKHGKNDRDERKK 359

Query: 453 RPESTS 470
           RP + S
Sbjct: 360 RPATIS 365


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/87 (19%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +3

Query: 150 EIIREDSYKSSEGVKKIVGSKIITTRDDN--VKSQFNNRKTTAIHQDNKTFSTQSETHTK 323
           ++IR++S   S  +++++G+  I   + N  VKS+  ++  T +  + +    +  T   
Sbjct: 99  KVIRKESRTDSSSIEQVIGTSSIQEMETNEQVKSKDTSKDMTQVPANAEGIRKEYTTKVN 158

Query: 324 QSHTEHSSIKHVHSGTHKYISTSEDIN 404
           +  +   +  +  SG    ++T +D+N
Sbjct: 159 RQESRTGNKDNGQSGRSISLNTKKDVN 185


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
 Frame = +3

Query: 273 IHQDNKTFSTQ--SETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTIS 446
           +H  N+    +   +T+++       S+K    G +KYIS S   N    S+D ++  ++
Sbjct: 14  VHNSNQAAKRRLRPQTNSRAPSDGSQSVKRSSCGKNKYISNSN--NGSHASDDAHNSILT 71

Query: 447 QKRPEST----------SSSDIIERTRSPSVN 512
            KR  ST          +  D+IER +  S+N
Sbjct: 72  AKRRRSTQPNLQDTEQDTEQDVIERVQVQSLN 103


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 324 QSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTISQKRPESTSSSDII 485
           +SH  HS++   H      + T  D  + +   D++D  IS  RP   +S+  I
Sbjct: 397 RSHAVHSNLIATHPRIKLVVDTPRDYLDASGFADLDDLIISGNRPRMCTSTSFI 450


>09_02_0569 -
           10752756-10753164,10753229-10753644,10754149-10755349,
           10756770-10756991,10757615-10757767,10757883-10758034,
           10758142-10758222,10758353-10758598,10759394-10759516
          Length = 1000

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 153 IIREDSYKSSEGVKKIVGS-KIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETH 317
           I+ +D YK      KIVGS K  TT    +     + KTT + Q N  FS  +ETH
Sbjct: 456 IVGQDEYKD-----KIVGSIKQGTTGTIGICGMGGSGKTTLLKQLNNIFSCAAETH 506


>12_02_0743 - 22701228-22701689
          Length = 153

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 180 SEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHS 344
           SE  KK + SK +TT   N++  F  ++    HQ N T   ++ ++ +Q H   S
Sbjct: 89  SEAFKKKITSKTLTTPVYNIRLGFYPKEKKINHQHNAT-KKENGSYIRQHHYHQS 142


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/50 (26%), Positives = 20/50 (40%)
 Frame = +3

Query: 258  RKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINN 407
            ++TT   +       +   H    H EH  +    +  H  ISTSE I +
Sbjct: 881  KQTTETTEQKGKHENKIRNHPHDPHVEHIELMEARNSKHMAISTSETIRD 930


>04_04_1324 + 32659752-32661972,32662067-32662761
          Length = 971

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/72 (20%), Positives = 31/72 (43%)
 Frame = +3

Query: 177 SSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKH 356
           S +  ++++G  +    DD+  S    R+  ++   +         H + S + H +   
Sbjct: 256 SHDAGRRLLGVTLSEATDDSDDSGLPGRRLLSMSFHDADHGVHGGDHRRLSMSFHDADHE 315

Query: 357 VHSGTHKYISTS 392
           VH G H+ +S S
Sbjct: 316 VHGGEHRRLSMS 327


>03_02_0322 +
           7448046-7448135,7448402-7448515,7449119-7449437,
           7449519-7450453
          Length = 485

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 1/98 (1%)
 Frame = +3

Query: 213 IITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTS 392
           I+   DD  K      K   + ++ +    + E  + +    H  I      TH      
Sbjct: 49  IVVLPDDGCKKSLMLDKIVDLQKEREKAEKKKEKRSDRKALPHGEISKHSKRTHHKKRKH 108

Query: 393 EDINNRTTSEDINDRTISQKRP-ESTSSSDIIERTRSP 503
           EDINN     D   R +S   P E    S + E   +P
Sbjct: 109 EDINN----ADQKSRKVSSMEPGEQLEKSGLSEEHGAP 142


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 30/160 (18%), Positives = 59/160 (36%)
 Frame = +3

Query: 9   PGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEG 188
           P E P  IRP   L  E   +  +      S        +D+I  + ++  E + + +  
Sbjct: 451 PSEPPEDIRPVKKLEQEETKEADEASNETNSAIFSDLNQEDSIVASKQLETELA-EEAAA 509

Query: 189 VKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSG 368
              +     I   +  V      ++  A   +  T    +   T+    ++S+    H+ 
Sbjct: 510 FSNLDQEGGIADSESQVADLEEAKEIEATETEEITHQPPAAVSTELPKEDNSTRSEPHND 569

Query: 369 THKYISTSEDINNRTTSEDINDRTISQKRPESTSSSDIIE 488
             ++    + I  + T E    + ISQ+R  +TS  D +E
Sbjct: 570 DIQHSLEQDSIEVKDT-EAAEIQEISQERTIATSKEDAVE 608


>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 3/148 (2%)
 Frame = +3

Query: 54  PEGDFDRPDTQKW-VPSE--KSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSKIITT 224
           P    +R   +K+ +PS   ++   +  D +++ G IIR     +   ++    +  + +
Sbjct: 135 PANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGNIIRNKVADTGNPLQSSNFTAEVNS 194

Query: 225 RDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDIN 404
            +    S+ N ++   + +   T +  S      +H E S  +     +    + S  +N
Sbjct: 195 TELARLSRLNRKRKLDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMN 254

Query: 405 NRTTSEDINDRTISQKRPESTSSSDIIE 488
           +R + E    R      P     S + E
Sbjct: 255 DRVSKEGNITRNKVAVPPRKKKKSSVKE 282


>11_06_0275 -
           21818071-21818192,21818457-21818520,21820699-21820902,
           21821852-21821986,21822704-21823022,21823111-21823161,
           21823251-21823394,21823610-21823690,21823782-21823832,
           21823922-21824065,21824280-21824363,21824442-21824585,
           21824677-21824726
          Length = 530

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 25/148 (16%), Positives = 56/148 (37%), Gaps = 3/148 (2%)
 Frame = +3

Query: 54  PEGDFDRPDTQKW-VPSE--KSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSKIITT 224
           P    +R   +K+ +PS   ++   +  D +++ G IIR     +   ++    +  + +
Sbjct: 135 PANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGNIIRNKVADTGNPLQSSNFTAEVNS 194

Query: 225 RDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDIN 404
            +    S+ N ++   + +   T +  S      +H E S  +     +    + S  +N
Sbjct: 195 TELARLSRLNRKRKLDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMN 254

Query: 405 NRTTSEDINDRTISQKRPESTSSSDIIE 488
           +R + E    R      P     S + E
Sbjct: 255 DRVSKEGNITRNKVAVPPRKKKKSSVKE 282


>06_01_1159 -
           9852316-9852441,9852743-9852838,9852912-9852977,
           9853091-9853180,9853262-9853373,9853515-9853598,
           9853864-9853940,9854823-9854873,9854924-9855031,
           9855703-9855774,9856952-9857011,9857808-9857876,
           9858005-9858088,9858212-9858295,9859106-9859198,
           9859930-9860030,9861155-9861264,9863058-9863104,
           9863693-9863778,9863940-9864012,9864454-9864540,
           9864650-9865301,9866164-9867182,9867702-9867797
          Length = 1180

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 25/118 (21%), Positives = 51/118 (43%)
 Frame = +3

Query: 126 KDNITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQ 305
           K  +   G I  E S  +S+  K   G+K  TTR    KS  + +K  +  +D K     
Sbjct: 151 KSTLAACGTITDEASTSTSKRSKSGTGTKKTTTRR---KSPTSRKKEAS--EDMKEEKAS 205

Query: 306 SETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTISQKRPESTSSSD 479
           ++   K   T  ++ K    G ++  S S+   ++  ++   ++  S +  +S+ + +
Sbjct: 206 TKKQRKSVKTSTAATKSRKIGVNQEESKSDISKSKKAADSSKEKKTSSRSKKSSKAKE 263


>12_02_0995 +
           25104303-25104486,25105164-25105275,25106466-25106554,
           25106635-25106703,25106784-25106913,25107073-25107231,
           25107364-25107736,25108070-25108182,25108429-25108624,
           25108855-25109288,25109360-25109495,25109668-25111086
          Length = 1137

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/88 (20%), Positives = 43/88 (48%)
 Frame = +3

Query: 234 NVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRT 413
           N    + N K+++   +N+     ++ H  +S   H  +  V +G     S+S  +N++ 
Sbjct: 606 NTGGAWTNVKSSSNRGNNRR---NNKDHDARSGLGHGGLNSVPNGIAGS-SSSTSVNSKD 661

Query: 414 TSEDINDRTISQKRPESTSSSDIIERTR 497
              + +DR +SQK+  +   +D++  ++
Sbjct: 662 HQHE-DDRVVSQKKQNAHRQTDVMSPSK 688


>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 156 IREDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHT 335
           I+    K  +   KI+    I    D +K+    +KT  I +D+K +++Q    T   H 
Sbjct: 648 IKNTKQKIKQLTGKIMEQMTIQIICDKIKTLLGGKKTMIIIEDDKDYASQWREITNALHQ 707

Query: 336 EHSS 347
             SS
Sbjct: 708 LSSS 711


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
 Frame = +3

Query: 54  PEGDFDRPDTQKW-VPSE--KSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSKIITT 224
           P    +R   +K+ +PS   ++   +  D +++ G IIR     +   ++    +  + +
Sbjct: 135 PANHIERSRKEKYQIPSTNMETNSLKMNDRVSKEGNIIRNKVADTGNPLQSSNFTAEVNS 194

Query: 225 RDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDIN 404
            +    S+ N ++   + +   T +  S      +H E S  +     +    + S  +N
Sbjct: 195 TELARLSRLNRKRKLDLRRSGSTLNNSSTCSNPANHIERSRKEKYQIPSTNMETNSLKMN 254

Query: 405 NRTTSE 422
           +R + E
Sbjct: 255 DRVSKE 260


>07_01_0957 + 8037825-8038199,8038775-8038948
          Length = 182

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 33  RPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEG 188
           +P D    +G+ D  +    V S + G  R  DN+ R G+I R    + + G
Sbjct: 67  QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRRGIEVAAG 117


>04_03_0385 + 15239611-15239988
          Length = 125

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 33  RPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEG 188
           +P D    +G+ D  +    V S + G  R  DN+ R G+I R    + + G
Sbjct: 53  QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRRGIEVAAG 103


>04_03_0338 + 14623636-14624013
          Length = 125

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 33  RPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEG 188
           +P D    +G+ D  +    V S + G  R  DN+ R G+I R    + + G
Sbjct: 53  QPADEFEEDGNVDESERTS-VMSRRGGCDREGDNVQRLGDITRRRGIEVAAG 103


>05_07_0267 +
           28818396-28818513,28819292-28819697,28819796-28819973,
           28820414-28820553,28820629-28821874,28821952-28822052,
           28822170-28822314,28822755-28822823,28822910-28822955,
           28823049-28823422,28823622-28823701,28823813-28823948,
           28824199-28824358,28824582-28824664,28825417-28825545
          Length = 1136

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 204 GSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSI--KHVHSGTHK 377
           G +++    D  K+  + + +   H  N   ++ S + T  SH   SSI     H  ++ 
Sbjct: 335 GVELVRFSQDQSKAAPDTQLSNTRHPSNLKPNSSSTSLTNSSHPLESSILSSTTHGHSNS 394

Query: 378 YISTSEDINNRTTSE 422
            +S     + RTT+E
Sbjct: 395 SMSLHSQSSGRTTAE 409


>01_06_0883 + 32708037-32708558,32708627-32708911,32709661-32709675
          Length = 273

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 258 RKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSED 398
           R   A +Q     ++ S +    S   HSS  +VH   H+++ +  D
Sbjct: 53  RSAFAAYQSTAAMASSSSSSESLSRRYHSSASNVHRRMHRFLRSIYD 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,193,815
Number of Sequences: 37544
Number of extensions: 220675
Number of successful extensions: 668
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -