Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0909
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.9  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   4.3  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.7  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   10.0 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   10.0 

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 309 ETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTISQKRPESTSSSD 479
           +T  K      + +  V  G  +     E+ +++   E  N+   SQK   ++SSSD
Sbjct: 55  KTFDKGPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSD 111


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 9/121 (7%)
 Frame = +3

Query: 54  PEGDFDRPDTQKWVPSEKSGPFRPKDNITR--NGEIIR-----EDSYKSSEGVKKIVGS- 209
           PE  F + D+   + + ++ PFRP   + +  N ++       +D  +  + + + + + 
Sbjct: 268 PEAYFPKLDS---LVASRTWPFRPSGTVLKDINRQVDELNFDIQDLERWRDRIYEAIHTG 324

Query: 210 KIITTRDDNVK-SQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYIS 386
            +I TR + ++ ++ N         +    S     +    +  H +I ++H   H+Y+ 
Sbjct: 325 SVINTRGERIQLTEKNGIDVLGNIMEASILSPNQNVYGDLHNFGHVAISYIHDPDHRYLE 384

Query: 387 T 389
           +
Sbjct: 385 S 385


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 57  EGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIRED 167
           E DF  PD+    P E  G     +++T   + IRED
Sbjct: 386 EIDFSFPDSVSDYPLELKGSPDGFESVTSQYKNIRED 422


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 240 KSQFNNRKTTAIHQDNKTFSTQSETHTK 323
           + +  NRK+   H DN    T   T  K
Sbjct: 109 RPELTNRKSVVFHHDNARPHTSLVTRQK 136


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +3

Query: 288 KTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRT 413
           K +S     H+K S      +K V+   +KY      +   T
Sbjct: 481 KDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNGVSLKGET 522


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/66 (16%), Positives = 27/66 (40%)
 Frame = +3

Query: 231 DNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNR 410
           ++ K++   RK     ++     T+ E   +       S   +H+  +KY   + + NN 
Sbjct: 47  NSYKNEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNN 106

Query: 411 TTSEDI 428
             ++ +
Sbjct: 107 NYNKKL 112


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 333 TEHSSIKHVHSGTHKYISTSEDI 401
           TE+ ++K +H G  + I   +++
Sbjct: 333 TEYQAVKEMHDGIAELIKLEKEL 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,912
Number of Sequences: 438
Number of extensions: 3000
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)