Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0909
(517 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39840.1 68417.m05645 expressed protein 37 0.007
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 36 0.016
At3g28770.1 68416.m03591 expressed protein 34 0.065
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 34 0.065
At2g03630.1 68415.m00323 hypothetical protein 32 0.20
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 31 0.46
At1g09170.1 68414.m01024 kinesin motor protein-related similar t... 31 0.61
At5g13970.1 68418.m01633 expressed protein 30 0.80
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 30 1.1
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 1.1
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 29 1.4
At2g04620.1 68415.m00470 cation efflux family protein potential ... 28 4.3
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 28 4.3
At5g61080.1 68418.m07664 expressed protein predicted proteins, A... 27 5.7
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 27 5.7
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 27 5.7
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 27 5.7
At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa... 27 5.7
At1g07860.1 68414.m00853 expressed protein 27 5.7
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfa... 27 7.5
At4g21550.1 68417.m03113 transcriptional factor B3 family protei... 27 7.5
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 27 7.5
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 27 7.5
At1g60640.1 68414.m06826 expressed protein 27 7.5
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 7.5
At3g03230.1 68416.m00319 esterase/lipase/thioesterase family pro... 27 9.9
At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-... 27 9.9
At1g73460.1 68414.m08504 protein kinase family protein contains ... 27 9.9
At1g67650.1 68414.m07720 expressed protein 27 9.9
>At4g39840.1 68417.m05645 expressed protein
Length = 451
Score = 37.1 bits (82), Expect = 0.007
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 3/116 (2%)
Frame = +3
Query: 168 SYKSSEGVKKIVGSKIIT--TRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEH 341
S SS G KK +K++ + + K+Q KTT + +K ST+S ++T ++ +E
Sbjct: 83 SSSSSSGTKKNQ-TKLLKPISSSSSTKNQTKLAKTTTMGTSHKLNSTKSSSNTTKTSSE- 140
Query: 342 SSIKHVHSGTHKYISTSEDINNRTTSEDINDRT-ISQKRPESTSSSDIIERTRSPS 506
+K ++SGT STS + S+ + + + K P S SS E+ PS
Sbjct: 141 --LKKLNSGTKSTNSTSSIKKSADLSKSSSSKNKTTIKPPSSKLSSPPSEKKSQPS 194
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 35.9 bits (79), Expect = 0.016
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Frame = +3
Query: 90 WVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVKK-IVGSKIITTRDDNVKSQFNNRKT 266
++P E S ++++ E ++ ++ G + G + +++ K +FNN
Sbjct: 47 FIPLETSEKTTVEESVLNKKEQEQDPTFVPESGNGYGLYGHETTYNNNNDNKEEFNNNNK 106
Query: 267 TAIHQDNKTFSTQSETHTKQS---HTEHSSIKHVHSGTHKYISTSEDINNRTTSEDIN 431
++KTFST S + T++S + E+ K + GT Y +E+ NN D N
Sbjct: 107 NDEKVNSKTFSTPSLSETEESFNNYEENYPKKTENYGTKGY--NNEEFNNNNNKYDAN 162
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 33.9 bits (74), Expect = 0.065
Identities = 34/145 (23%), Positives = 60/145 (41%)
Frame = +3
Query: 15 ETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVK 194
++ S+ R K + + + +K + KD+ R + +E+S + + K
Sbjct: 1004 DSASKNREKKEYEEKKSKTKEEAKKEKKKSQDKKREEKDSEERKSKKEKEES-RDLKAKK 1062
Query: 195 KIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTH 374
K +K +N KS+ K H+DNK+ + + K+ H E S K
Sbjct: 1063 KEEETKE-KKESENHKSKKKEDKKE--HEDNKSMKKEEDKKEKKKHEESKSRKKEED--K 1117
Query: 375 KYISTSEDINNRTTSEDINDRTISQ 449
K + ED N+ ED N++ SQ
Sbjct: 1118 KDMEKLEDQNSNKKKEDKNEKKKSQ 1142
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 33.9 bits (74), Expect = 0.065
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Frame = +3
Query: 69 DRPDTQKWVPSEKSGPFRPKDNITRNGEI-IREDSYKSSEGVKKIVGSKII--TTRDDNV 239
DRPD W P +P + NGE+ R S +S E V G + + R +
Sbjct: 380 DRPDRVMWAPRRDGSEDQPLSSAGNNGEVKDRMFSQRSGEVVNSSGGHTLENGSARHSSR 439
Query: 240 KSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGT 371
+ NRK + + KT S + SH + I+ SGT
Sbjct: 440 RVGGRNRKEEVVIGEGKT-SRRGSGGGPSSHEKQMWIQKPSSGT 482
>At2g03630.1 68415.m00323 hypothetical protein
Length = 252
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/74 (24%), Positives = 31/74 (41%)
Frame = +3
Query: 225 RDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDIN 404
+D N K ++ H+ T++ +SH+ SS S + Y+S +D+
Sbjct: 17 QDVNKKGSLDDENGDVEHKTIPLQETETVIINSESHSRLSSSSSSSSSSSSYLSPPKDLP 76
Query: 405 NRTTSEDINDRTIS 446
E +ND IS
Sbjct: 77 EEVLKESLNDPEIS 90
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 31.1 bits (67), Expect = 0.46
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Frame = +3
Query: 9 PGETPSQIRPKDN--LRPEGD--FDRPDTQKWVPSEKSGP-FRPKDNI---TRNGEIIRE 164
P ETP++ + D P+ D + D Q+ EK+ F P T GE ++
Sbjct: 80 PVETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQKD 139
Query: 165 DSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHS 344
DS + G + K + D N ++T +DN+ + + KQ +++
Sbjct: 140 DSKSENGGGGDLDEKKDLKDNSDEENPDTNEKQTKPETEDNEL--GEDGENQKQFESDNG 197
Query: 345 SIKHVHSGTHKYISTSEDINNRTTSEDINDRT 440
K + S+ +D N+T +ED +T
Sbjct: 198 EKKSIDDDKK---SSDDDKENKTGNEDTETKT 226
>At1g09170.1 68414.m01024 kinesin motor protein-related similar to
GB:AAB61066
Length = 1010
Score = 30.7 bits (66), Expect = 0.61
Identities = 22/74 (29%), Positives = 34/74 (45%)
Frame = +3
Query: 135 ITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSET 314
I+ N E + + SY E V +IV + + ++D NV+ N KT Q
Sbjct: 307 ISGNEETLSDASY-GEENVTEIVNNNMEASQDSNVEELENQDYELYAISKEKTEKQQLII 365
Query: 315 HTKQSHTEHSSIKH 356
+Q+HTE +KH
Sbjct: 366 ERQQTHTE--ELKH 377
>At5g13970.1 68418.m01633 expressed protein
Length = 404
Score = 30.3 bits (65), Expect = 0.80
Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 3/127 (2%)
Frame = +3
Query: 78 DTQKWVPSEKSGPFRPKD---NITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVKSQ 248
+ +WV S R KD N+ ++ED+ E V K+ + DN+
Sbjct: 135 EADEWVELPASFNEREKDPRANLIAAKLRLKEDA----EAVNKLNSLHVSEELQDNLSMS 190
Query: 249 FNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDI 428
N K + +DN E+H S + + +K + S+ S D+
Sbjct: 191 TENEKPFVVSEDN-LLGAFKESHVGSS--DENGLKPILKRRENQADDSKSPKRVRFSSDV 247
Query: 429 NDRTISQ 449
DRT+++
Sbjct: 248 KDRTLTE 254
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 884
Score = 29.9 bits (64), Expect = 1.1
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 2/161 (1%)
Frame = +3
Query: 39 KDNLRPEGD--FDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSK 212
+D+ +P G D T + E G D+ + + ++E+ KS+E VK + +K
Sbjct: 705 QDSNKPYGKDLSDEVSTDRSRIVETKGGKEKGDSQNDSKDRMKENDLKSAEKVKGVESNK 764
Query: 213 IITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTS 392
T D +VK + + + ++T S + K+ E +H +
Sbjct: 765 KST--DPHVKKDSRD-----VERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRR 817
Query: 393 EDINNRTTSEDINDRTISQKRPESTSSSDIIERTRSPSVND 515
+ +S+D ++ S++R S S + SPS ++
Sbjct: 818 RSPTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDE 858
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide I)
[Bos taurus]
Length = 897
Score = 29.9 bits (64), Expect = 1.1
Identities = 33/161 (20%), Positives = 66/161 (40%), Gaps = 2/161 (1%)
Frame = +3
Query: 39 KDNLRPEGD--FDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSK 212
+D+ +P G D T + E G D+ + + ++E+ KS+E VK + +K
Sbjct: 675 QDSNKPYGKDLSDEVSTDRSRIVETKGGKEKGDSQNDSKDRMKENDLKSAEKVKGVESNK 734
Query: 213 IITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTS 392
T D +VK + + + ++T S + K+ E +H +
Sbjct: 735 KST--DPHVKKDSRD-----VERPHRTNSKEDRGKRKEKEKEEERSRHRRAENSSKDKRR 787
Query: 393 EDINNRTTSEDINDRTISQKRPESTSSSDIIERTRSPSVND 515
+ +S+D ++ S++R S S + SPS ++
Sbjct: 788 RSPTSNESSDDSKRKSRSRRRSVSPSPVRSRRKRSSPSSDE 828
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +3
Query: 39 KDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVKK 197
K+ + PE + P+T+ W+ + P+ K + + GE+ E + + KK
Sbjct: 171 KEEIEPEAE--NPETEAWLRKNRKSPWSRKKEVVQ-GELTEEQKKYAEDHAKK 220
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +3
Query: 306 SETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSED 425
S++H + H EH H HS H+ + + D +++ S +
Sbjct: 586 SDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSHN 625
Score = 27.1 bits (57), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 306 SETHTKQSHTEHSSIKHVHSGTHKY 380
+ +H+ QSH+ + H HS +HK+
Sbjct: 555 THSHSHQSHSHKNEEHHQHSDSHKH 579
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 27.9 bits (59), Expect = 4.3
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 2/169 (1%)
Frame = +3
Query: 6 TPGETPSQIRPKDNLRPEGDFDRPDTQKW--VPSEKSGPFRPKDNITRNGEIIREDSYKS 179
T GET S+I P + + +G PDT + + E + T +G+ ++ +
Sbjct: 1790 TQGETSSEIAPPASKKAKGSESHPDTSEGENLAKEPAIDELMDATTTTDGDNEETEAENA 1849
Query: 180 SEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHV 359
E ++ V ++ D+ V+ +T ++++ Q+E ++ T+ S K
Sbjct: 1850 EEKTEEYVEAQQDNEADEPVEESPTETETIPTEEESR---DQTEEENQEPLTDMESDK-- 1904
Query: 360 HSGTHKYISTSEDINNRTTSEDINDRTISQKRPESTSSSDIIERTRSPS 506
G + T ED+ T D+ S ++ E + T+SPS
Sbjct: 1905 EEG-ELDLDTLEDLEEGT---DVASMMRSPEK-EEVQPETLATPTQSPS 1948
>At5g61080.1 68418.m07664 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 348
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +3
Query: 6 TPGETPSQIRPKDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYK 176
TP +P +++ + ++ P F++ T V G P ++TR+ I+R+ S K
Sbjct: 168 TPSRSPEKVKGEASVPP--GFEKIWTPPLVKLNIQGTSNPLSDLTRSAGIVRDQSGK 222
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 213 IITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTS 392
+I++ DN F+ KTTA + F +TH +S + H S + + +GT I
Sbjct: 99 LISSAKDNCIKFFDFSKTTA----KRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHL 154
Query: 393 EDIN 404
D+N
Sbjct: 155 YDVN 158
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 27.5 bits (58), Expect = 5.7
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 213 IITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTS 392
+I++ DN F+ KTTA + F +TH +S + H S + + +GT I
Sbjct: 191 LISSAKDNCIKFFDFSKTTA----KRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHL 246
Query: 393 EDIN 404
D+N
Sbjct: 247 YDVN 250
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.5 bits (58), Expect = 5.7
Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 1/152 (0%)
Frame = +3
Query: 27 QIRPKDNLRP-EGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGVKKIV 203
+IR KD+ R E + DR ++ ++ R K+ R + R D K + K+
Sbjct: 50 KIRDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKE---REKDKSR-DRVKEKDKEKERN 105
Query: 204 GSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYI 383
K DN K + +R K+ ETH EHS + ++ G
Sbjct: 106 RHKDRENERDNEKEKDKDRARVKERASKKSHEDDDETHKAAERYEHSDNRGLNEGGDNVD 165
Query: 384 STSEDINNRTTSEDINDRTISQKRPESTSSSD 479
+ S ++ D+ +R + + + D
Sbjct: 166 AASS--GKEASALDLQNRILKMREERKKKAED 195
>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 754
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 393 EDINNRTTSEDINDRTISQKRPESTSSS 476
+D N +T+ED++ TIS P+ SS+
Sbjct: 500 DDSGNLSTAEDLSSLTISDTEPQHASSA 527
>At1g07860.1 68414.m00853 expressed protein
Length = 135
Score = 27.5 bits (58), Expect = 5.7
Identities = 16/78 (20%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Frame = +3
Query: 243 SQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDI---NNRT 413
S N+ + +IH+ K+ + ++E+H + S++ S +ST++++ +N T
Sbjct: 57 SVMNDGEIMSIHRLEKSMAVRNESHVSLAILASSAVSPASSALVAVVSTNQNLTTFHNAT 116
Query: 414 TSEDINDRTISQ-KRPES 464
S+ +++++ K+P +
Sbjct: 117 QSQQNATQSVNKAKQPHA 134
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.1 bits (57), Expect = 7.5
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
Frame = +3
Query: 69 DRPDTQKWVP--SEKSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVK 242
D P +++ +P K + +GE++ E S + I + +RD V
Sbjct: 119 DSPTSERSLPRGKTKESTISVHSESSVSGEVVTEAGSSSRGTGRSIHQRPDLVSRDARVS 178
Query: 243 SQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHV-HSGTHKYISTSEDINNRTTS 419
+ N + + + +S + S++ + ++ T S+S N+T
Sbjct: 179 NSEQNARASVNKNGLRDLRNKSGSDVLPSNSTPTRKSNIFRKKTSDGESSSSSRGNKTEG 238
Query: 420 EDINDRTISQKRPESTSSSDIIERTRSPSVND 515
+ + IS + + S+ PSV D
Sbjct: 239 SVVGGKNISSPQGNGITMSEPRRNRNLPSVRD 270
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.1 bits (57), Expect = 7.5
Identities = 27/152 (17%), Positives = 56/152 (36%), Gaps = 3/152 (1%)
Frame = +3
Query: 69 DRPDTQKWVP--SEKSGPFRPKDNITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVK 242
D P +++ +P K + +GE++ E S + I + +RD V
Sbjct: 119 DSPTSERSLPRGKTKESTISVHSESSVSGEVVTEAGSSSRGTGRSIHQRPDLVSRDARVS 178
Query: 243 SQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHV-HSGTHKYISTSEDINNRTTS 419
+ N + + + +S + S++ + ++ T S+S N+T
Sbjct: 179 NSEQNARASVNKNGLRDLRNKSGSDVLPSNSTPTRKSNIFRKKTSDGESSSSSRGNKTEG 238
Query: 420 EDINDRTISQKRPESTSSSDIIERTRSPSVND 515
+ + IS + + S+ PSV D
Sbjct: 239 SVVGGKNISSPQGNGITMSEPRRNRNLPSVRD 270
>At5g22100.1 68418.m02573 RNA cyclase family protein contains Pfam
profiles: PF01137 RNA 3'-terminal phosphate cyclase,
PF05189 RNA 3-prime-terminal phosphate cyclase (RTC)
Length = 375
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 432 DRTISQKRPESTSSSDIIERTRSPS 506
D T+S +RP+ T D+ ++ RSP+
Sbjct: 256 DTTVSCERPDETGELDVEKKERSPA 280
>At4g21550.1 68417.m03113 transcriptional factor B3 family protein
low similarity to SP|Q01593 Abscisic acid-insensitive
protein 3 {Arabidopsis thaliana}, SP|P37398 Viviparous
protein homolog {Oryza sativa}; contains Pfam profile
PF02362: B3 DNA binding domain
Length = 721
Score = 27.1 bits (57), Expect = 7.5
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 162 EDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIH-QDNKTFSTQSETHTKQSHTE 338
E +S G K S+ + DD VKS F + +++ H Q+NK + +T T+ + T
Sbjct: 658 EKDEESLPGSNKTTKSETLP-HDDTVKSSFTSPSSSSAHSQNNKEDEGKLKTTTEIADTT 716
Query: 339 HSS 347
+S
Sbjct: 717 TTS 719
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar
to SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.1 bits (57), Expect = 7.5
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 144 NGEIIR--EDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKT-TAIHQDNKTFSTQSET 314
+GE+ + E+ S+G+K S+ ++ N S ++ ++ HQD S + E
Sbjct: 534 SGELYKVCENEVFLSKGIKDAKDSQ--KKKNSNAVSVAPKQQMGSSAHQDGSK-SQKHEA 590
Query: 315 HTKQSHTEHSSIKHVHSGTHKYISTSED 398
H++ +HSS+K V G Y S++
Sbjct: 591 HSRGKQNKHSSVKDV--GKSSYSGNSQN 616
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
identical to retinoblastoma-related protein [Arabidopsis
thaliana] GI:8777927; contains Pfam profiles: PF01858
retinoblastoma-associated protein A domain, PF01857
retinoblastoma-associated protein B domain
Length = 1013
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +3
Query: 258 RKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSED---INNRTTSEDI 428
+K +A+H + S+ SH+ S V TH Y S S+D INNR +
Sbjct: 900 KKVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHAYQSPSKDLSAINNRLNNSSS 959
Query: 429 N-DRTIS 446
N RT++
Sbjct: 960 NRKRTLN 966
>At1g60640.1 68414.m06826 expressed protein
Length = 340
Score = 27.1 bits (57), Expect = 7.5
Identities = 27/125 (21%), Positives = 51/125 (40%)
Frame = +3
Query: 126 KDNITRNGEIIREDSYKSSEGVKKIVGSKIITTRDDNVKSQFNNRKTTAIHQDNKTFSTQ 305
KD++T+NGE + ++ K+I G++ R + +SQ + ++ H +N+
Sbjct: 189 KDSLTKNGENEEVEDPETPSQEKQIKGNR--RARRELRRSQKQEKDSSTKHGENEEVDNS 246
Query: 306 SETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTISQKRPESTSSSDII 485
+ E+S + K S + D N T SQ++ +SS
Sbjct: 247 GTPSQGKQIKENSRARRQRKRLEKQGKGSLTKHGENEEVD-NPETPSQEKQIKGNSSSRR 305
Query: 486 ERTRS 500
+ RS
Sbjct: 306 QLKRS 310
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.1 bits (57), Expect = 7.5
Identities = 26/153 (16%), Positives = 62/153 (40%), Gaps = 4/153 (2%)
Frame = +3
Query: 39 KDNLRPEGDFDRPDTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKS--SEGVKKIVGSK 212
KDN + +G R D + + + P + +D+ E+I+ + S ++ + + G+
Sbjct: 672 KDNTKMQGSSSREDVSANIKVKTAQPDKLQDDAAMTNEVIQSSKFVSPKNDQIMEDEGNH 731
Query: 213 IITTR--DDNVKSQFNNRKTTAIHQDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYIS 386
++ + + + T + Q N + Q+ Q T+ +V S K
Sbjct: 732 MVNAASVEKHELEEGELSPTASREQSNFEVNGQNAFKPLQKVTD-----NVRSNKDKQSC 786
Query: 387 TSEDINNRTTSEDINDRTISQKRPESTSSSDII 485
+ N+T +ED + + ++S+++
Sbjct: 787 DKKGAKNKTRAEDDKQENCHKLSENNKTASEML 819
>At3g03230.1 68416.m00319 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 333
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 288 KTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDI 401
K T+ + + HT+HS IK Y++T +DI
Sbjct: 215 KDTMTERDLELAEKHTKHSYIKESALRQGGYVTTQQDI 252
>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
/ HD-ZIP transcription factor 17 identical to
(GI:18857716) homeodomain-leucine zipper protein ATHB-17
(GI:18857716) [Arabidopsis thaliana]
Length = 275
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +3
Query: 78 DTQKWVPSEKSGPFRPKDNITRNGEIIREDSYKSSEGV---KKIVGSKIITTRDDNVKSQ 248
D +++ + S P R K +TR + EDS++ + + +K V +K + R ++
Sbjct: 124 DDEEFSHDDGSAPPRKKLRLTREQSRLLEDSFRQNHTLNPKQKEVLAKHLMLRPRQIEVW 183
Query: 249 FNNRK 263
F NR+
Sbjct: 184 FQNRR 188
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 26.6 bits (56), Expect = 9.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +3
Query: 279 QDNKTFSTQSETHTKQSHTEHSSIKHVHSGTHKYISTSEDINNRTTSEDINDRTISQKRP 458
Q + FS S QS SS K + SG H+ ++ + + S ++D + +R
Sbjct: 684 QTDGGFSFGSSQKDGQSMHAESS-KSLWSGNHETVTRDRNTERLSASTAMDDMVATWRRK 742
Query: 459 ESTSSS 476
S SSS
Sbjct: 743 SSDSSS 748
>At1g67650.1 68414.m07720 expressed protein
Length = 651
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 75 PDTQKWVPSEKSGPFRPKDNITRNGEI 155
PD ++W+P + +RPK R +I
Sbjct: 579 PDPERWLPRRERSSYRPKRKDKRAAQI 605
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,355,084
Number of Sequences: 28952
Number of extensions: 197167
Number of successful extensions: 688
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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