Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0908
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.29 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.2  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   4.8  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   8.3  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 32/114 (28%), Positives = 56/114 (49%)
 Frame = -2

Query: 549 TAAVAELSESGLTKSLMRLLVFSSTQSLIDLAATVFFEKSMFWTSELKTSVETTAKXXXX 370
           T++ + +S S  + S +      ST SL+  ++++    S   +S + T   +++     
Sbjct: 608 TSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSS----- 662

Query: 369 XXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 208
                TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 663 ---LSTYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = -2

Query: 420 TSELKTSVETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 241
           TS + TS+ ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 240 KSSSWVSPSEA 208
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 284 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 379
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 194 AQLALASDGETHE--ELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGG 367
           A L+  SDGE       L+ + + D++    +   K+ D    +  +  +  +V + DG 
Sbjct: 345 ASLSSDSDGEEGHIVHALEEMAY-DEENPYVDVVPKAMD--ESENPDFGVDTEVNMADGS 401

Query: 368 KLDENFAVVSTDVFNSDVQNIDFS 439
            ++EN++++ST   N   +  D S
Sbjct: 402 TMNENYSIISTAAANGVYEYFDKS 425


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 443 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 532
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 389 LQNSRLVFHHHERILYSPF*AQRL*LI 309
           L+    +++ H ++++SPF +QR+ L+
Sbjct: 901 LEKQWTLYYSHSKLMFSPFSSQRIILL 927


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 71  NLSNVLKNGNDNFTARMFTEVV 136
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,762
Number of Sequences: 5004
Number of extensions: 46950
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)