Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0908
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      84   9e-17
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      73   2e-13
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      66   2e-11
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   2.8  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   3.7  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   6.5  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 27   8.6  
SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_22491| Best HMM Match : RanGAP1_C (HMM E-Value=2.4)                 27   8.6  
SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)               27   8.6  
SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
 Frame = +2

Query: 167 SAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELKMANK 346
           S  S++  LA   L + G T  ++ K   FP D   +     ++ +  +  G ++ MAN+
Sbjct: 33  SPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQILMANR 92

Query: 347 VYVHDGGKLDENFAVVSTDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDLVNPD 523
           ++   G ++ E F   S + F++++  +D+ KN+  A+ ++N WVE+ T ++IK+L+   
Sbjct: 93  LFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNLIPEG 152

Query: 524 SLSSATAAVLVNAIYFKGAWSSKF 595
             +  T   LVNA+YFKG+W   F
Sbjct: 153 MFNKDTILCLVNAVYFKGSWMKHF 176


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 5/140 (3%)
 Frame = +2

Query: 191 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 358
           L  + L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ H
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64

Query: 359 DGGKLDENFAVVSTDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 535
           D  ++ E F   + + ++S++  +DF +K   A K +N WV + T   IK+L+    ++S
Sbjct: 65  DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124

Query: 536 ATAAVLVNAIYFKGAWSSKF 595
            T  ++VNA+YFKG W  +F
Sbjct: 125 LTRLIIVNAVYFKGVWKKEF 144


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
 Frame = +2

Query: 326 ELKMANKVYVHDGGKLDENFAVVSTDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 502
           E+ +AN +++     + + F  +    +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 503 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKF 595
            DL+ P   +  T   LVNAIYFKG W   F
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPF 139


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 368 KLDENFAVVSTDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 508
           K +E+  + S  +F+ + +N+DFS +     ++ DW   VE    N ++D
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +2

Query: 53  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 220
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 61  CHCRDGDSKQTNDCL 17
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRFSL 147
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 392 VSTDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKD 508
           V+ +VF++DV ++DFS +      ++   +E +N  ++D
Sbjct: 713 VNDEVFDTDVIDVDFSGDMAGKGKVSGNADEVSNVEVRD 751


>SB_35263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 359 DGGKLDENFAVVSTDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDS 526
           D   + +N  ++  +  NSD  N   + NT    +I+D    + NN I D  N D+
Sbjct: 211 DNNNISDNNNIIDNN--NSDNNNTSDNNNTSDNNNISDNNNTSDNNNISDNNNSDN 264


>SB_22491| Best HMM Match : RanGAP1_C (HMM E-Value=2.4)
          Length = 268

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +2

Query: 395 STDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRI----KDLVNPDSLSSATAA 547
           S+D   +  Q+   SKNTV  KS++      + NR+      L+N  +LSS  A+
Sbjct: 167 SSDQTTTTEQSCSSSKNTVQVKSVDTLDNNLSQNRVHSQGSQLLNTGALSSPCAS 221


>SB_4113| Best HMM Match : Homeobox (HMM E-Value=1.7e-05)
          Length = 224

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
 Frame = +2

Query: 260 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSTDVFNSDVQNIDFS 439
           D   +R+    K    R I+G   +M +K+      KLD  F  +  D   +  ++   +
Sbjct: 30  DSGLVRSPAVIKPHRKRRIRGTAKRMRSKLSKRQVNKLDAAF--MENDFPTTIARHKLAA 87

Query: 440 KNTVAAKSINDWVEEN-TNNR--IKDLVNPDSLSSATAAV 550
           +     K I  W+++N   NR  ++DL  P +  SA  ++
Sbjct: 88  EIKAPVKRIKSWLKQNRAKNRAQLRDLA-PSASESAAISI 126


>SB_49672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 218 HQKLKLTEREEAAPKMPRGQRF 153
           H+ L + ER+ ++PK PR  +F
Sbjct: 21  HENLSINERDSSSPKRPRQHQF 42


>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 134 VKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAI 274
           ++  P  S VLS  S  PPL  +    +  T   + + I  PD++A+
Sbjct: 221 IELGPQSSGVLSLTSDPPPLEAMGKEGEAHTDSGVEEEIDIPDEEAV 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,999
Number of Sequences: 59808
Number of extensions: 345900
Number of successful extensions: 1092
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)