Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0908
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.24 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.56 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   0.98 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   1.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 146 PGKSVVLSAFSVLPPLAQLALASDGET-HEELLKAIGFPDDDAIRTEFASKSR 301
           P K +   AF   PPL + A+    +T    ++KA+ F D     T+ A K++
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDAAGKVTKAAEKAQ 458


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 463 RLSCDCILREINVLD 419
           +L C+CIL+  N+LD
Sbjct: 60  QLYCECILKNFNILD 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 275 RTEFASKSRDLRSIKGVELKMANKVYVH--DGGKLDENFAVVSTDVFNSDVQNIDFSKNT 448
           R    S + + R+I+  +L    K Y +  D    D N  + ST   ++ V+N    KNT
Sbjct: 432 RNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEI-STRPKSNTVENACVLKNT 490

Query: 449 VAAKSINDWVE 481
              K  +DW +
Sbjct: 491 EIFKDKSDWFD 501



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 395 STDVFNSDVQNIDFSKNTVAAKSIND 472
           S ++  +  QNID +KNT+     ND
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNND 435


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 478 YPIVNRLSC--DCILREINVLDVRIEDVRGNDCKILV 374
           +P   +L C  +C+L + NV+D +   +R N  K ++
Sbjct: 62  FPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLLKKVI 98


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 173 MPRGQRFSLDYFSLLR 126
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 173 MPRGQRFSLDYFSLLR 126
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,321
Number of Sequences: 438
Number of extensions: 3301
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)