Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0907
(403 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 1.4
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 26 2.5
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 2.5
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 3.3
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 25 3.3
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 25 3.3
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 4.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 4.4
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 4.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 5.8
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 24 7.7
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 7.7
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 1.4
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 10/109 (9%)
Frame = +2
Query: 80 NGYQDPKHP----EEEVVSNWPYRTT-PLVLPGAKVRREPGPTESYLRHHPNPAMRAPPN 244
NG++D + EVV N+ PL + ++ E R P P ++A N
Sbjct: 402 NGFEDQQQQLLGNSNEVVENYDVNPPLPLNPLPSNTQQSESTYEYSARQLPKPPVQAWQN 461
Query: 245 HDYRDTLMKQKVL-----HKQFNSPINLYSEQNIANSIRQQTSPLPTNG 376
+ Q+ + + N+P SEQ+ S+ Q+ P NG
Sbjct: 462 ENLSSNNKPQEYVGVENDYNFSNNPPTAMSEQSFHPSVSQKPMDTPENG 510
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 2.5
Identities = 23/86 (26%), Positives = 32/86 (37%)
Frame = -1
Query: 289 LVQHLLFHKGITVVVVRRCPHCWVGVMTQVTLCGARLPSDLSSREHERSGAVRPVADNFF 110
L+ HL + + + RCP V V+ L + L S G + A NF
Sbjct: 76 LLSHLSLCQNLIEFLTARCPRLVV-VLPWTVL---QELDGLKSESSSTCGYLARQAHNFL 131
Query: 109 FRMFRILVSVREEVGVERHCYTCRYG 32
+ FR VS V HC + G
Sbjct: 132 LQCFRSNVSSLRGQKVHEHCSSTEKG 157
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.8 bits (54), Expect = 2.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 35 IPTSVTMSLNPNFFPN-GYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRH 211
IP SV S NF Q+P + S P P+ +V ++P P + +
Sbjct: 159 IPPSVEASSGQNFNQGIASQNPAISTSNLPSTTPLYIPPVNYGANQVSQQPNPQLPGVSN 218
Query: 212 HPNPAMRAPP 241
+ NP+ + P
Sbjct: 219 YYNPSATSKP 228
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 3.3
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 149 LVLPGAKVRR-EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQ 325
L L GA V+R P P H N A R NH +++ + QF +P N +
Sbjct: 147 LELLGAHVQRVTPAPIVDP-NHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHF 205
Query: 326 N 328
N
Sbjct: 206 N 206
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 131 PYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQ 292
P PL P ++ R+P P S P+ APP H R+ + + H +
Sbjct: 44 PVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQ-REASPVKNIEHSE 96
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 14 NSARGTSIPTSVTMSLNPNFFPNGYQDPKHPEEEVVS 124
NS + SIP T ++N + P GY KHP + ++
Sbjct: 73 NSMKLPSIPAPGTDNINESHIPRGYW--KHPAVDKIA 107
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 90 WYPFGKKLGLSDIVTLVGMDVPRAEFLQ 7
WY GK++ LVG P E LQ
Sbjct: 60 WYSLGKRISQPSYARLVGPSRPTLENLQ 87
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.0 bits (52), Expect = 4.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 2 PGCRNSARGTSIPTSVTMSLNPNFFPN 82
PGC S+ +S + SL FFPN
Sbjct: 430 PGCPPQYVARSLKSSKSASLKTGFFPN 456
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 4.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -1
Query: 166 SSREHERSGAVRPVADN-FFFRMFRILVSVREEVGVE 59
+S + RS ++P ADN FR+ R ++S EE+ ++
Sbjct: 980 ASTDESRSVLIKPKADNVILFRLKRFIMS-SEEINLD 1015
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 53 MSLNPNFFPNGYQDPKHPEEEVV 121
++LNP FF N + + P E+ V
Sbjct: 461 LALNPEFFKNANGEQQAPNEQAV 483
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.2 bits (50), Expect = 7.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 182 PGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVL 283
P P ++ + PNP+ P + + +D K K++
Sbjct: 607 PAPLQNVYLYSPNPSALPPSDEEEKDINDKAKLI 640
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 24.2 bits (50), Expect = 7.7
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 209 HHP--NPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHY 382
HH N +R+ +HDYR + +H+ N I + + +S + S L T+ H+
Sbjct: 113 HHSTGNGLLRSSFDHDYRQKNSPRNSIHRLSNISIG-NNPIDFESSQQNNPSSLNTSSHH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,496
Number of Sequences: 5004
Number of extensions: 37433
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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