Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0907
(403 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 31 0.22
At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family... 29 0.88
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 29 1.5
At1g21310.1 68414.m02662 proline-rich extensin-like family prote... 29 1.5
At3g60320.1 68416.m06742 expressed protein contains Pfam profile... 28 2.0
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr... 28 2.7
At1g79250.1 68414.m09239 protein kinase, putative similar to vir... 27 3.5
At1g12970.1 68414.m01506 leucine-rich repeat family protein 27 3.5
At5g62270.1 68418.m07818 expressed protein 27 6.2
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr... 27 6.2
At1g17130.1 68414.m02087 cell cycle control protein-related cont... 27 6.2
At5g15680.1 68418.m01834 expressed protein 26 8.2
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 26 8.2
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi... 26 8.2
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 31.5 bits (68), Expect = 0.22
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 209 HHPNPAMRAPPNHD--YRDTLMKQKVLHKQFNSPINLYSEQ 325
H+P P M+ PP HD Y M+Q + KQ + I+ Y +
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGRE 440
>At3g24860.1 68416.m03118 hydroxyproline-rich glycoprotein family
protein contains proline-rich domains,
INTERPRO:IPR000694
Length = 310
Score = 29.5 bits (63), Expect = 0.88
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 127 LAVPHHSSRAPGS*GPKGAW--PHRELPASSPQPSNEGTS*P 246
+A P +S P P A PH++ P S PQP+N + P
Sbjct: 1 MATPSPTSSPPSDSNPNSAATPPHQKQPPSPPQPTNPSSPPP 42
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMRAPP 241
P+ P+ P+E N PY +P+ K RR P P + P+P PP
Sbjct: 463 PSPVHKPQPPKESPQPNDPYDQSPV-----KFRRSPPPPPVHSPPPPSPIHSPPP 512
>At1g21310.1 68414.m02662 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 431
Score = 28.7 bits (61), Expect = 1.5
Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 9/115 (7%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 250
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 303 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 362
Query: 251 YRDTLMKQKVLHKQFNSPINLYSEQNIANS-------IRQQTSPLPTNGHYGRPH 394
+ K+ ++K P+ YS + +S ++ P P HY PH
Sbjct: 363 HSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYSPPH 417
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 250
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 79 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 138
Query: 251 YRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHY 382
+ K+ ++K P+ YS + + SP P HY
Sbjct: 139 HSPPPPKKHYVYKSPPPPVKHYSPPPVYH------SPPPPKKHY 176
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 250
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 135 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 194
Query: 251 YRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHY 382
+ K+ ++K P+ YS + + SP P HY
Sbjct: 195 HSPPPPKKHYVYKSPPPPVKHYSPPPVYH------SPPPPKKHY 232
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 250
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 191 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 250
Query: 251 YRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHY 382
+ K+ ++K P+ YS + + SP P HY
Sbjct: 251 HSPPPPKKHYVYKSPPPPVKHYSPPPVYH------SPPPPKKHY 288
Score = 27.1 bits (57), Expect = 4.7
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPAMR--APPNHD 250
P Y P P++ V P P P P + Y+ P P ++ +PP
Sbjct: 247 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVY 306
Query: 251 YRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHY 382
+ K+ ++K P+ YS + + SP P HY
Sbjct: 307 HSPPPPKKHYVYKSPPPPVKHYSPPPVYH------SPPPPKKHY 344
Score = 26.2 bits (55), Expect = 8.2
Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 PNGYQDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTESYLRHHPNPA---MRAPPNH 247
P Y P P++ V P P P P E Y+ P P +PP+H
Sbjct: 359 PPVYHSPPPPKKHYVYKSPPPPVKHYSPPPVYHSPPPPKEKYVYKSPPPPPVHHYSPPHH 418
Query: 248 DY 253
Y
Sbjct: 419 PY 420
>At3g60320.1 68416.m06742 expressed protein contains Pfam profiles:
PF04782: protein of unknown function (DUF632), PF04783:
protein of unknown function (DUF630)
Length = 796
Score = 28.3 bits (60), Expect = 2.0
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 8/135 (5%)
Frame = +2
Query: 2 PGCRNSARGTSIPTSVTMSLNPNFFPNGYQD------PKHPEEEVVSNWP--YRTTPLVL 157
P + + +S P S + PN +P+ YQ+ P H V NW Y +P
Sbjct: 136 PHILSESSPSSSPRSERSNFMPNLYPSAYQNSTYSATPSHASS--VWNWENFYPPSPPDS 193
Query: 158 PGAKVRREPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIAN 337
+ + S R + +D+ DT KQK KQF S N E+
Sbjct: 194 EFFNRKAQEKKHNSDNRFNDEDTETVRSEYDFFDT-RKQK--QKQFESMRNQVEEETETE 250
Query: 338 SIRQQTSPLPTNGHY 382
Q S + HY
Sbjct: 251 REEVQCSEWEDHDHY 265
>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 393
Score = 27.9 bits (59), Expect = 2.7
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +2
Query: 107 EEEVVSNWPYRTTPLVLPGAKVRREPGPTE-SYLRHHPNPAMRAPPNHDYRDTLMKQKVL 283
+ E + P TTP LP KVR+E + + L+ +P + ++ + K L
Sbjct: 260 DNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
Query: 284 HKQFNSPINLYSEQNIANSIRQQTS 358
H Q Y +Q +N +QQ S
Sbjct: 320 HDQVTVLSTPYMKQGASNQQQQQIS 344
>At1g79250.1 68414.m09239 protein kinase, putative similar to viroid
symptom modulation protein/dual-specificity protein
kinase [Lycopersicon esculentum] gi|7672777|gb|AAF66637
Length = 555
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +2
Query: 179 EPGPTESYLRHHPNPAMRAPPNHDYRDTLMKQKVLHKQFNSPINLYSEQNIANSIRQQTS 358
+P P H PNP+ + P + T + + K N+ N S + ++ + TS
Sbjct: 55 KPEPAGFTNHHRPNPSPKIPSSPGSNMTESQSNLNTKPNNNNSNNNSNMSSRSNSIESTS 114
Query: 359 PLPTNGHYG 385
P+ H G
Sbjct: 115 SNPSKPHTG 123
>At1g12970.1 68414.m01506 leucine-rich repeat family protein
Length = 464
Score = 27.5 bits (58), Expect = 3.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 188 PTESYLRHHPNPAMRAPPN 244
P SY+ HH +PA APP+
Sbjct: 9 PLLSYVLHHSDPASHAPPS 27
>At5g62270.1 68418.m07818 expressed protein
Length = 383
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 109 RRSCQQLAVPHHSSRAPGS*GPKGAWPHRELPASSPQPSNE 231
RRS + + A G G G W LP S +P NE
Sbjct: 326 RRSSEGWKITVEKLGAKGKRGAGGGWKFMSLPDGSSRPLNE 366
>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 347
Score = 26.6 bits (56), Expect = 6.2
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = +2
Query: 107 EEEVVSNWPYRTTPLVLPGAKVRREPGPTE-SYLRHHPNPAMRAPPNHDYRDTLMKQKVL 283
+ E + P TTP LP KVR+E + + L+ +P + ++ + K L
Sbjct: 260 DNESAAKKPRVTTPSPLPTFKVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFL 319
Query: 284 HKQFNSPINLYSEQNIANSIRQQ 352
H Q Y +Q +N +QQ
Sbjct: 320 HDQVTVLSTPYMKQGASNQQQQQ 342
>At1g17130.1 68414.m02087 cell cycle control protein-related
contains similarity to Swiss-Prot:Q9P7C5 cell cycle
control protein cwf16 [Schizosaccharomyces pombe]
Length = 331
Score = 26.6 bits (56), Expect = 6.2
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = +2
Query: 89 QDPKHPEEEVVSNWPYRTTPLVLPGAKVRREPGPTES 199
++PK P+++ +S P+++ + + ++++P PT S
Sbjct: 264 ENPKEPKKQAISKQPFKSVHIKV----IKKQPQPTSS 296
>At5g15680.1 68418.m01834 expressed protein
Length = 2151
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 227 LLGWGDDAGNSLWGQ 183
LL W DD GN+ WGQ
Sbjct: 971 LLSWSDDTGNT-WGQ 984
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 91 LVSVREEVGVERHCYTCR-YGRASCRIP 11
L EE GV R CY CR + +C++P
Sbjct: 257 LTESTEEDGVRRCCYKCRKHFCINCKVP 284
>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
to O-acetyltransferase (GI:17016934) [Homo sapiens];
contains 11 transmembrane domains
Length = 540
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 35 IPTSVTMSLNPNFFPNGYQDPKHPEEEVVSNWPYRT 142
IP + +P F GY DP PE ++ W +R+
Sbjct: 304 IPGVFEIFWSPLTFLLGYTDPAKPELPLLHEWHFRS 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,579,392
Number of Sequences: 28952
Number of extensions: 208631
Number of successful extensions: 627
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 585758608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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