Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0906
(446 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 132 1e-31
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 127 3e-30
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 36 0.016
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 34 0.050
At4g27500.1 68417.m03950 expressed protein non-consensus GA dono... 32 0.20
At3g53540.1 68416.m05912 expressed protein 32 0.20
At5g27500.1 68418.m03287 hypothetical protein hypothetical prote... 31 0.27
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 30 0.62
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 30 0.82
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 30 0.82
At2g30500.1 68415.m03715 kinase interacting family protein simil... 30 0.82
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 1.1
At5g07220.1 68418.m00823 BAG domain-containing protein contains ... 29 1.4
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 29 1.9
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar... 29 1.9
At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to S... 29 1.9
At1g29000.1 68414.m03546 heavy-metal-associated domain-containin... 28 2.5
At5g06850.1 68418.m00774 C2 domain-containing protein contains I... 28 3.3
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 3.3
At2g05180.1 68415.m00545 cytochrome P450 family protein similar ... 28 3.3
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden... 27 4.4
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 27 4.4
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 27 4.4
At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ... 27 4.4
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 27 5.8
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 27 5.8
At3g04830.2 68416.m00524 expressed protein 27 5.8
At3g04830.1 68416.m00523 expressed protein 27 5.8
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi... 27 7.6
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ... 27 7.6
At3g54630.1 68416.m06044 expressed protein weak similarity to re... 27 7.6
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 27 7.6
At3g04990.1 68416.m00542 hypothetical protein 27 7.6
At3g01290.1 68416.m00037 band 7 family protein similar to hypers... 27 7.6
At1g55545.1 68414.m06357 nucleoporin-related similar to nucleopo... 27 7.6
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 132 bits (319), Expect = 1e-31
Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Frame = +3
Query: 114 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 293
ED +++ M T++I TRLLDNEI+I+K + R + E + +KIKEN EKIK+
Sbjct: 7 EDTSSFEEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQEKIKL 66
Query: 294 NKTLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYF 446
NK LPYLV N++E+L+++P+++ EEDGA +DLDSQRKGKC V+KTSTRQT F
Sbjct: 67 NKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIF 118
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 127 bits (307), Expect = 3e-30
Identities = 59/104 (56%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Frame = +3
Query: 138 EEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLV 317
+++ M TD+I +RLL NEI+I+K E R + +L++ +KIKEN EKIK+NK LPYLV
Sbjct: 14 DQLASMTTDDIGRASRLLANEIRILKEESQRTNLDLESVKEKIKENQEKIKLNKQLPYLV 73
Query: 318 SNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAVIKTSTRQTYF 446
N++E+L++ P+++ EEDGA +DLDSQRKGKC V+KTSTRQT F
Sbjct: 74 GNIVEILEMSPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIF 117
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 35.5 bits (78), Expect = 0.016
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +3
Query: 195 NEIKIMKSEVMRISHELQAQNDKIKENTEKI-KVNKTLPYLVSNVIELLDVDPQEEEEDG 371
NE++I+K E + EL+ + DK+ E + K K L LV + + ++D E+E G
Sbjct: 267 NEMEIVKIEQKGVIEELERKLDKLNETVRSLTKEEKVLRDLVIGLEK--NLDESMEKESG 324
Query: 372 AVVDLDSQRKGKCAVIKTS 428
+V++D+ GK IK S
Sbjct: 325 MMVEIDA--LGKERTIKES 341
Score = 29.1 bits (62), Expect = 1.4
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 99 DKSIWEDGE--EALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKE 272
DK++ E+ E L EVL+ ++++V++T ++KI + + ++L++Q++ +K
Sbjct: 445 DKALDEEKRNGEDLKAEVLK--SEKMVAKTLEELEKVKIERKSLFSAKNDLESQSESLK- 501
Query: 273 NTEKIKVNKTL 305
+E +K+ K L
Sbjct: 502 -SENVKLEKEL 511
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 33.9 bits (74), Expect = 0.050
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Frame = +3
Query: 102 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHEL-QAQNDKIKENT 278
++I +GEEAL E+ DE + T L + + S + +S L Q ++D + EN
Sbjct: 775 ETICGEGEEALKEDKSPTVVDEALEDTALPEANLSDPSSPTVVVSKVLTQLKDDILAENV 834
Query: 279 EKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTY 443
KI +P V+ L D EE+ V + I STR+ Y
Sbjct: 835 SKIPEKVAVP---EEVLTQLKDDVLEEKVSEKVAIPEEVSILSRVPINISTRRAY 886
>At4g27500.1 68417.m03950 expressed protein non-consensus GA donor
splice site at exon 6
Length = 612
Score = 31.9 bits (69), Expect = 0.20
Identities = 21/92 (22%), Positives = 45/92 (48%)
Frame = +3
Query: 123 EEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKT 302
++ ++ +R E + + + ++K+M + + + E QA + +I E +EK+K K
Sbjct: 218 DKVIANAAMRAKIKESMGQKDDIQGQVKLMGAGLDGVKKERQAISARINELSEKLKATKD 277
Query: 303 LPYLVSNVIELLDVDPQEEEEDGAVVDLDSQR 398
++ N EL V + ++ + DL QR
Sbjct: 278 EITVLEN--ELKTVSEKRDKAYSNIHDLRRQR 307
>At3g53540.1 68416.m05912 expressed protein
Length = 924
Score = 31.9 bits (69), Expect = 0.20
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Frame = +3
Query: 6 WRARGWVQVLLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTR 185
W++ V +L N + ++HNI MATT + S++ED E+ S + T + R
Sbjct: 775 WKSSYLVDLLANSS--FSDSDHNIVMATTPVEPSLFEDLEKKYSS----VKTSTRLERKL 828
Query: 186 LLDNEIKIMKSEVMRISH-ELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEE 362
L D + + + ++S ++ K+ + K+ +TL LV+ E EE+
Sbjct: 829 LFDQISREVLHMLKQLSDPHPWVKSTKVCPKWDANKIQETLRDLVTRKDEKPSKYDVEEK 888
Query: 363 E 365
E
Sbjct: 889 E 889
>At5g27500.1 68418.m03287 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 187
Score = 31.5 bits (68), Expect = 0.27
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +3
Query: 99 DKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENT 278
D S W++ ++ + + V ++++ ++ NEI +SEV I +EL A ++KE+
Sbjct: 47 DPSSWKNKKDWVEDAVYE-EVEDVLPNLGIMANEIVKARSEVNEIVNELSASIQELKEDA 105
Query: 279 --EKIKVNK 299
K+++ K
Sbjct: 106 MCSKMEIRK 114
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 30.3 bits (65), Expect = 0.62
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 339 DVDPQEEEEDGAVVDLDSQRKGKCAVIKTSTRQTYF 446
D + +EEEE+ VV++ ++KGK + +ST F
Sbjct: 279 DEEEEEEEEEEVVVEVKKKKKGKAKIEHSSTAPPEF 314
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 29.9 bits (64), Expect = 0.82
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 249 AQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQ 395
A D IK +T+KI ++ +L N +V+P + E D D Q
Sbjct: 206 ANKDDIKSDTDKINLDNHDLFLAFNRTRSYNVEPDDRAESEVAEDFDPQ 254
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 29.9 bits (64), Expect = 0.82
Identities = 19/67 (28%), Positives = 35/67 (52%)
Frame = +3
Query: 195 NEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGA 374
N+I IM S++ R L+A D+ K EK+ ++ + ++SN + + D +EE G
Sbjct: 577 NKIIIMISDLDRRVESLEAFKDEQKAKEEKVHIDNCV--ILSNTMITRNQDEMNQEEAGD 634
Query: 375 VVDLDSQ 395
+ D +
Sbjct: 635 SREKDQE 641
>At2g30500.1 68415.m03715 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 517
Score = 29.9 bits (64), Expect = 0.82
Identities = 21/103 (20%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Frame = +3
Query: 114 EDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKV 293
EDG+EAL + + + ++ +LL + + + + H++ ++KE EK+++
Sbjct: 156 EDGDEALIRRMAELELELQETKQKLLLQQESVDGDNNVDLLHKITTYEGELKEANEKMRM 215
Query: 294 NK-TLPYLVSNVIELLDVDPQEE-EEDGAVVDLDSQRKGKCAV 416
++ + L + + + D ++ + VDLD + + AV
Sbjct: 216 HEDEIANLKNQLQSFMSFDTEDHLGAEQKSVDLDKEDTKEDAV 258
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/102 (25%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Frame = +3
Query: 24 VQVLLNL-KDYYEK-----TNHNITMATTLEDKSIWEDGEEALSEEVLRMPT---DEIVS 176
+ LN+ K YEK + N ++A LE+ E G+ ++ V+ +E
Sbjct: 1460 IHYTLNMTKRKYEKEKDELSKQNQSLAKQLEEAK-EEAGKRTTTDAVVEQSVKEREEKEK 1518
Query: 177 RTRLLDNEIKIMKSEVMRISHELQAQNDKI-KENTEKIKVNK 299
R ++LD + +K EV + + +L+ +++++ KE +E+ V K
Sbjct: 1519 RIQILDKYVHQLKDEVRKKTEDLKKKDEELTKERSERKSVEK 1560
>At5g07220.1 68418.m00823 BAG domain-containing protein contains
Pfam:PF02179 BAG domain
Length = 303
Score = 29.1 bits (62), Expect = 1.4
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Frame = +3
Query: 126 EALSEEVLRMPTDEIVSRTRLLDNEIKIM-KSEVMRISHELQAQND-KIKENTEKIKVNK 299
E L ++LR+ D I++ D ++K+M K +V R+ ++A + K+K + +K++VNK
Sbjct: 176 EMLMNQLLRL--DAIIA-----DGDVKLMRKMQVQRVQKYVEALDLLKVKNSAKKVEVNK 228
Query: 300 TLPYLVSNVI-----ELLDVDPQEEEE 365
++ + +LL +EEEE
Sbjct: 229 SVRHKPQTQTRFEQRDLLSFVEEEEEE 255
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 114 EDGEEALSE-EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIK 290
E+ E+ SE EVL + E L ++ ++SE+ R+ E++A++D+ E ++++
Sbjct: 447 EEEEKLKSEIEVLTLEKVEKGRCIETLSRKVSELESEISRLGSEIKARDDRTMEMEKEVE 506
>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
to M protein, serotype 5 precursor (SP:P02977)
{Streptococcus pyogenes} and to Myosin heavy chain,
non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
{Drosophila melanogaster}
Length = 537
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +3
Query: 162 DEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKI 287
DEI +++ L+ ++K + + R+S E++ Q +KE + I
Sbjct: 255 DEIEDKSKKLEYQVKEQEDIIQRLSMEIKDQKKLLKEQKDAI 296
>At3g24350.1 68416.m03057 syntaxin, putative (SYP32) similar to
SP|Q9FFK1 Syntaxin 31 (AtSYP31) (AtSED5) {Arabidopsis
thaliana}, syntaxin 5A GB:NP_003155 from [Homo sapiens]
(J. Mol. Neurosci. (1997) 8 (2), 159-161)
Length = 347
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = +3
Query: 33 LLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIM 212
L+N ++ ++ +H I +A + + + + A V PT EI T ++ EI +
Sbjct: 52 LINKSEFNKRASH-IGLAINQTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISAL 110
Query: 213 KSEVMRISHELQAQNDKIKENTEKIK 290
S ++ + +QND+ + ++ K
Sbjct: 111 NSALVDLQLFRSSQNDEGNNSRDRDK 136
>At1g29000.1 68414.m03546 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 287
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = +3
Query: 222 VMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRK 401
V + +L+ K+K E +K++K + +EL+ P E ++ S +
Sbjct: 42 VQNVDFDLEKNEIKVKGKIEVVKIHKQIEKWSKKKVELISPKPSEVKKTTTTTTTTSVVE 101
Query: 402 GKCAVIKTSTRQT 440
K IK +T
Sbjct: 102 KKTTEIKKDVIRT 114
>At5g06850.1 68418.m00774 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 669
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 252 QNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEE 365
Q + ++ K+ V+ L YL NVIE DV+P + +
Sbjct: 74 QGEGVQSVRSKVYVSPKLWYLRVNVIEAQDVEPSDRSQ 111
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/72 (18%), Positives = 40/72 (55%)
Frame = +3
Query: 141 EVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVS 320
EVL+ ++ S+ + + +++I+++++ + +L+ ++ E+++ ++S
Sbjct: 1042 EVLQKEVNDFQSKENVTEKQVEILETQMEELQDKLRDTTMDNEQLQEQLRGKDMELLIIS 1101
Query: 321 NVIELLDVDPQE 356
N +ELL + +E
Sbjct: 1102 NEMELLTSELEE 1113
>At2g05180.1 68415.m00545 cytochrome P450 family protein similar to
Cytochrome P450 93A1 (SP:Q42798) {Glycine max}
Length = 442
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = +3
Query: 42 LKDYY--EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMP 158
+K +Y EKT I + D WED +E E LR P
Sbjct: 389 IKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAP 429
>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
identical to non-phototropic hypocotyl 3 [Arabidopsis
thaliana] gi|6224712|gb|AAF05914, PMID:10542152
Length = 746
Score = 27.5 bits (58), Expect = 4.4
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 201 IKIMKSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVV 380
++++ SE ++IS+ L N +KE+T + T ++ N L++ PQ +E A
Sbjct: 596 VQVLFSEQVKISNALA--NTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQEGWAAA 653
Query: 381 DLD-SQRKGKCAVIKT 425
D + K + +KT
Sbjct: 654 KKDINTLKFELETVKT 669
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 27.5 bits (58), Expect = 4.4
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +3
Query: 213 KSEVMRISHELQAQNDKIKENTEKIKVNKTLPYLVSNVIELL-----DVDPQEEEEDGAV 377
+S S ++Q+ K K + +KV L N ++ + +PQEEEE+
Sbjct: 662 RSAAQSSSQPKESQSSK-KNKGKAVKVVDPKETLADNFMDTVRRLQSSQNPQEEEEEAIS 720
Query: 378 VDLDSQR--KGKCAVIKTSTRQT 440
D ++ R KGK V+ T + T
Sbjct: 721 KDKNTYRSDKGKSQVVGTDSSST 743
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 27.5 bits (58), Expect = 4.4
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Frame = +3
Query: 96 EDKSIWEDGEEALS---EEVLRMPTD-EIVSRTRLLDNEIKIMKS---EVMRISHELQAQ 254
E+K+IW E+AL+ EE +R+ + +I S ++ + E K ++S E + ++ L+
Sbjct: 1010 EEKAIWSSKEKALTEAVEEKIRLYKNIQIESLSKEMSEEKKELESCRLECVTLADRLRCS 1069
Query: 255 NDKIKENTE-KIKVNKTLPYLVSNVIELLDVDPQEEEEDGAVVD-LDSQRKGKCAVIKTS 428
+ K++ E ++ + + L + V Q +E + +D L S+ + C + T
Sbjct: 1070 EENAKQDKESSLEKSLEIDRLGDELRSADAVSKQSQEVLKSDIDILKSEVQHACKMSDTF 1129
Query: 429 TRQ 437
R+
Sbjct: 1130 QRE 1132
>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
GTP-binding protein ERG SP:O82653 from [Arabidopsis
thaliana]
Length = 437
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +3
Query: 102 KSIWEDGEEALSEEVLRMPTDEIVSRTRLLDN 197
K WE+ +SEEVL+ + E+V R RLLD+
Sbjct: 330 KKPWEEDAFTMSEEVLKNISLEVV-RERLLDH 360
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 27.1 bits (57), Expect = 5.8
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 207 IMKSEVMRISHELQAQNDKIKENTEKIK-VNKTLPYLVSNVIEL 335
I++++V +S + ND++ T KIK + +T+ +L S V EL
Sbjct: 1252 ILENKVNELSGVCENLNDEVVTKTTKIKQMKETVGFLESQVTEL 1295
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 27.1 bits (57), Expect = 5.8
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 171 VSRTRLLDNEIKIMKSEVMRISHELQAQNDK---IKENTEKIKVNKT-LPYLVSNVIELL 338
+SRTR +E R+ +L ND ++E E +V + + + + E +
Sbjct: 1 MSRTRTAASEAHDSMESEERV--DLDGDNDPEEILEEEVEYEEVEEEEIEEIEEEIEEEV 58
Query: 339 DVDPQEEEEDGAVVDLDSQRK 401
+V+ +EEEED + + ++K
Sbjct: 59 EVEEEEEEEDAVATEEEEEKK 79
>At3g04830.2 68416.m00524 expressed protein
Length = 299
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 84 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 188
A LE K +WE+ E+A + + P D+++ + ++
Sbjct: 101 ALLLEAKGMWEEAEKAYTSLLEDNPLDQVIHKRKV 135
>At3g04830.1 68416.m00523 expressed protein
Length = 303
Score = 27.1 bits (57), Expect = 5.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 84 ATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRL 188
A LE K +WE+ E+A + + P D+++ + ++
Sbjct: 105 ALLLEAKGMWEEAEKAYTSLLEDNPLDQVIHKRKV 139
>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
protein contains similarity to 67kD chloroplastic
RNA-binding protein, P67.1 [Raphanus sativus]
GI:9755886; contains Pfam profile PF01535: PPR repeat
Length = 711
Score = 26.6 bits (56), Expect = 7.6
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Frame = +3
Query: 132 LSEEVLRMPTDEIVSRTRLL-DNEIKIMKS--EVMRISHELQAQNDKIKE-NTEKIKVNK 299
LS LR +I+S+ + + N + +S + R + N +IK+ +K+N
Sbjct: 72 LSATTLRQEQTQILSKPKSVWVNPTRPKRSVLSLQRQKRSAYSYNPQIKDLRAFALKLNS 131
Query: 300 TLPYLVSNVIELLDVDPQEEEEDGAVVDLDSQRK 401
++ S + LLD P D A++ L+S R+
Sbjct: 132 SIFTEKSEFLSLLDEIPHPPNRDNALLVLNSLRE 165
>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 271
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +3
Query: 57 EKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSR 179
EKT ++T E W D E + E VL +P I SR
Sbjct: 7 EKTKVDVTEEEKEESDEQWSDEETNMREIVLGLPALNISSR 47
>At3g54630.1 68416.m06044 expressed protein weak similarity to
retinoblastoma-associated protein HEC [Homo sapiens]
GI:2501873
Length = 568
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +3
Query: 363 EDGAVVDLDSQRKGKCAVIKTSTRQT 440
ED V DLDSQ GK KTS +T
Sbjct: 191 EDDKVNDLDSQFLGKLEAEKTSVAET 216
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 255 NDKIKENTEKI-KVNKTLPYLVSNVIELLDVDPQEEEED 368
N+ KE +EK+ V+++ L SN + ++ + +EEEED
Sbjct: 50 NEVTKEQSEKMMSVSESNGGLDSNAVVTINQEEEEEEED 88
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 24 VQVLLNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTR---LLD 194
VQV+ LK Y + H +ED++ + E +++ + ++ ++ ++R L D
Sbjct: 110 VQVMAELKRRYSEARHVQKRKREMEDETATKKKELSMTVDQIQESGKQLEKKSREVELKD 169
Query: 195 NEIKIMKSEVMRISHELQAQNDKI 266
EI+ E+ + +++A K+
Sbjct: 170 KEIEEKGKELDLVKSQVKAWERKL 193
>At3g01290.1 68416.m00037 band 7 family protein similar to
hypersensitive-induced response protein [Zea mays]
GI:7716470; contains Pfam profile PF01145: SPFH domain /
Band 7 family
Length = 285
Score = 26.6 bits (56), Expect = 7.6
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +3
Query: 36 LNLKDYYEKTNHNITMATTLEDKSIWEDGEEALSEEVLRMPTDEIVSRTRLLDNEIKIMK 215
LNL D +E+ N DK++ G E L ++ + D+ V R NEI
Sbjct: 112 LNLDDVFEQKNEIAKSVEEELDKAMTAYGYEILQTLIIDIEPDQQVKRAM---NEIN--A 166
Query: 216 SEVMRISHELQAQNDKI 266
+ MR++ +A+ +KI
Sbjct: 167 AARMRVAASEKAEAEKI 183
>At1g55545.1 68414.m06357 nucleoporin-related similar to nucleoporin
CAN [Xenopus laevis] gi|5764080|emb|CAB53357
Length = 824
Score = 26.6 bits (56), Expect = 7.6
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = +3
Query: 120 GEEALSEEVLRMPTDEIVSRTRLLDNEIKIMKSEVMRISHELQAQNDKIKENTEKIKVNK 299
G A S+ L +D + T L+++++ SE + + QND+ NTEK +
Sbjct: 427 GRPASSDTDLASSSDIEDAYTPLIEDDLSKQSSEKHQ-QLNIAVQNDQKHLNTEKFSTEQ 485
Query: 300 TLP 308
LP
Sbjct: 486 RLP 488
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,927,680
Number of Sequences: 28952
Number of extensions: 130389
Number of successful extensions: 601
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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