Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0905
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy... 95 4e-21
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.5
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 7.5
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 24 9.9
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 24 9.9
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 24 9.9
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 24 9.9
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 24 9.9
>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 95.5 bits (227), Expect = 4e-21
Identities = 48/88 (54%), Positives = 59/88 (67%)
Frame = +1
Query: 70 LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 249
+ F+QAAA+VK LK P +LL LYA FKQATVGD + +PGLLDLKGK K++AW
Sbjct: 1 MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59
Query: 250 KLAGTSKEDAQKAYIEIVEGLIASIGLK 333
+L G SKEDA YI V+ L G+K
Sbjct: 60 ELKGKSKEDAASEYISFVDELKTKYGMK 87
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.5 bits (58), Expect = 1.1
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +1
Query: 82 FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 252
F Q AA+++ + DA LLN+Y +F+Q + V +A + L + +K + +W
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359
Query: 253 L-AGTSKEDAQKAYIEIVEGL 312
KE A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 7.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 121 LPTDAQLLNLYAHFKQATV 177
LP + ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 24.6 bits (51), Expect = 7.5
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 451 WRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 332
W QK D A+N YL S + HV+ S I S IL
Sbjct: 676 WVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 24.6 bits (51), Expect = 7.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 85 DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 189
DQ NV++ + P QL+ L+ +A V DAD
Sbjct: 40 DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 203 GLLAGSASPTVACLKWAYKL 144
G AG A ++CL WA++L
Sbjct: 136 GYHAGFAGSAISCLVWAHQL 155
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 24.2 bits (50), Expect = 9.9
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 106 KNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLK 222
+N PT + L Q +G + P N P LL +K
Sbjct: 501 QNNMVFPTSDRDTRLQNSLAQQPIGHSTPHNSPSLLSVK 539
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.2 bits (50), Expect = 9.9
Identities = 17/67 (25%), Positives = 29/67 (43%)
Frame = +1
Query: 40 TSYPHLINMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDL 219
T+ P+ N S E+ + KN+ P+ L KQ ++ P N G+ D+
Sbjct: 389 TNIPYSPN-SNHEEINSIPLRNKNIFVPPSQGHSPLLEKIKKQGSLPSTTPVNEGGISDI 447
Query: 220 KGKAKFD 240
K+ +D
Sbjct: 448 IPKSLYD 454
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 24.2 bits (50), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 140 SLTCMPISNRPQLEMPIQPI 199
+LT + +SNR E PIQP+
Sbjct: 19 ALTTLSLSNRNHEEDPIQPV 38
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 272 SFEVPASLCQASNLALPFKSRRP 204
S+ +PA + Q N +P K+ +P
Sbjct: 30 SYSLPAPVAQKKNAQIPLKASKP 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,153
Number of Sequences: 5004
Number of extensions: 38493
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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