Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0905
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 69 1e-12
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 68 3e-12
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 65 2e-11
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 53 1e-07
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 27 5.6
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 27 7.4
01_05_0353 + 21278753-21278884,21279482-21279535,21279912-212799... 27 7.4
11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 27 9.8
01_05_0221 - 19450497-19450586,19450758-19450856,19451059-194512... 27 9.8
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 69.3 bits (162), Expect = 1e-12
Identities = 37/84 (44%), Positives = 50/84 (59%)
Frame = +1
Query: 64 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 243
M LQE F+Q A K L ++ L LY +KQATVGD + A RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59
Query: 244 WHKLAGTSKEDAQKAYIEIVEGLI 315
W + G SKE+A YI V+ L+
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQLL 83
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 68.1 bits (159), Expect = 3e-12
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +1
Query: 64 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 243
M LQE F++ A VK L ++ L LY +KQATVGD + +RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59
Query: 244 WHKLAGTSKEDAQKAYIEIVEGL 312
W + G SKE+A YI V+ L
Sbjct: 60 WKAVEGKSKEEAMSDYITKVKQL 82
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 65.3 bits (152), Expect = 2e-11
Identities = 35/84 (41%), Positives = 49/84 (58%)
Frame = +1
Query: 64 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 243
M LQE+F++ A K L ++ L LY +KQATVG RPG+ +LK + K+DA
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59
Query: 244 WHKLAGTSKEDAQKAYIEIVEGLI 315
W + G SKE+A YI V+ L+
Sbjct: 60 WKAVEGKSKEEAMADYITKVKQLL 83
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1
Query: 94 AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKE 273
AA+ + ++P AQL LY +K AT G A +P L LK +AK++AWHKL E
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159
Query: 274 DAQKAYIEIVEGL 312
+A + YI +V+ L
Sbjct: 160 EAMQKYITVVDEL 172
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 27.5 bits (58), Expect = 5.6
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -2
Query: 239 SNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRFFTL 99
+N ALP K P A+P+ A L WA S+ +V R F F L
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFFMAL 434
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 27.1 bits (57), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 22 RVYRRLTSYPHLINMSLQEKFDQAAANVKNLKAL 123
R YR +TS+P L+N+S + LKAL
Sbjct: 499 RQYRAVTSFPALLNLSANSFTSVIPPKIGELKAL 532
>01_05_0353 +
21278753-21278884,21279482-21279535,21279912-21279991,
21280099-21280361,21280837-21280958
Length = 216
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 150 VCPFQTGHSWRCR 188
V P TGH WRCR
Sbjct: 113 VAPHSTGHVWRCR 125
>11_04_0129 -
13763651-13763911,13763978-13764327,13764448-13764606,
13764677-13765160
Length = 417
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 144 KELGISWKSFQVLHVGCGLVKFFLERHIDQMWV 46
KEL + Q+ V G+V F ++RH W+
Sbjct: 373 KELAMVMMEKQLCDVSHGIVAFIMQRHWGSWWI 405
>01_05_0221 -
19450497-19450586,19450758-19450856,19451059-19451209,
19451305-19451374,19451417-19451545,19451848-19451905,
19452037-19452215,19452545-19452944
Length = 391
Score = 26.6 bits (56), Expect = 9.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -2
Query: 368 CSCIIEN*VFYSLRPMEAMRPSTISM*AFWASSFEVPAS--LCQASNLALPFKSRRPGLL 195
C E +FY+ PM M PST S A +S + S L + LA P + + LL
Sbjct: 105 CLIRFETSIFYNGEPMRIMGPSTNSTSADGKASLQEKTSTYLYEEEALAWPIQGQSSELL 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,056,176
Number of Sequences: 37544
Number of extensions: 261213
Number of successful extensions: 605
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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