Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0903
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    27   0.88 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.7  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    25   4.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   6.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    24   6.2  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   6.2  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    24   6.2  
SPAC1486.08 |||mitochondrial inner membrane protein involved in ...    24   6.2  

>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 278 IFSATYQLWNELPSTVFLERYDISF 352
           IF+  YQ +  +PSTVF+  ++I F
Sbjct: 129 IFAILYQYYYIVPSTVFVRLFNIKF 153


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 352 EGYVIALEKHRGGEFIPELVRSRKDLWKRTVDERSKQFQIIW 227
           +GY+I L  +      P +V++  + WK  V E  K  + IW
Sbjct: 597 QGYLIQLT-YIFQSLSPTIVKNDNESWKNIVMELIKASETIW 637


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 189  KWWLRSTVVP 160
            KWWL ST VP
Sbjct: 1374 KWWLNSTAVP 1383


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 86  RCQQFKRLNDYFGRKASRDKKTS 18
           RC+ +K+  D++ R    D+K+S
Sbjct: 545 RCKDYKKALDFYDRACKLDEKSS 567


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 116  LYRFSYSERTRCQQFKRLNDYFGRKASRDKKTSCR 12
            L  +   + T     +RL D+ G + ++DK  +CR
Sbjct: 1041 LSEYGSQKSTSITTARRLADFLGDQMTKDKGLACR 1075


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 150  PHFKGPRYFVATIFIIPPLAIGAEFV 227
            PH  G   F A++ ++P +A+  +FV
Sbjct: 1151 PHLYGNLKFWASLLVLPTIALMRDFV 1176


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 352 EGYVIALEKHRGGEFIPELVRSRKDLWKRTVDERSKQFQIIW 227
           E YV+   KH GG F P+L R    L   T   R  ++ + W
Sbjct: 121 ENYVL---KH-GGTFCPDLTRDVTHLIAGTSSGRKYEYALKW 158


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 116 ENSKPKLGKDNTSF-*GTTVLRSHHFYHPTSRHRSRVRPY 232
           E  K ++GK NT+F  GT++  +H      S H +   P+
Sbjct: 482 ETIKDEVGKKNTAFSPGTSLSTNHVKTKSRSAHNNSTSPF 521


>SPAC1486.08 |||mitochondrial inner membrane protein involved in
           cytochrome c oxidase assembly Cox16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 198 PPLAIGAEF---VHIIWNCLLRSSTVRFQR 278
           P + +G  F   V ++W+CL+  S V+F R
Sbjct: 18  PFIYVGLPFLSSVLLVWSCLIPISQVKFNR 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,457
Number of Sequences: 5004
Number of extensions: 27188
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)