Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0903
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   1.1  
SB_8023| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.0  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.5  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.0  

>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 885

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/66 (27%), Positives = 25/66 (37%)
 Frame = +2

Query: 161  GTTVLRSHHFYHPTSRHRSRVRPYYLELLAAFIDSAFPKIFSATYQLWNELPSTVFLERY 340
            G   + +     P +R   R  P     L+    S     FS T   WN LP+ +F E  
Sbjct: 808  GLLSVNTRGLLRPVTRKTRRSHPESFIPLSTSSASEHLSFFSRTIIQWNNLPALLFNEPC 867

Query: 341  DISFFK 358
             +  FK
Sbjct: 868  SLPIFK 873


>SB_8023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 18  RGLFVA*CFASEIIVKSFKLLAPRSFTVAKPIKKTLSLN 134
           +GL  A C  S II KS +   PRS+T  + I   L LN
Sbjct: 209 KGLTHALCEVSVIISKSIRARDPRSWTCPRCILSDLPLN 247


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 257 IDSAFPKIFSATYQLWNELPSTVFLE 334
           ++SA   +  ATY  WN L  T FLE
Sbjct: 129 LESAPAAMLDATYTAWNRLSVTYFLE 154


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 156  FKGPRYFVATIFIIPPLAIGAEFVHIIWNCLLRSSTVRFQRS 281
            +  P+     + I+PP+A+GA    +++   LRS T R Q S
Sbjct: 945  YVSPKLTGIVLLIVPPVAVGA----VVYGRFLRSITKRTQDS 982


>SB_16221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 237 WNCLLRSS-TVRFQRSFLLRTSSGMNSP 317
           W+C++ S  T+ F R+FL  T    +SP
Sbjct: 341 WDCVILSQHTIHFSRAFLRVTKRAFHSP 368


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 250  CVHRQCVSKDLFC 288
            CV+ QCVS+DL C
Sbjct: 1126 CVNGQCVSRDLIC 1138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,921,961
Number of Sequences: 59808
Number of extensions: 196779
Number of successful extensions: 469
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)