Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0903
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    28   1.7  
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    27   3.0  
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    26   6.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    26   6.9  

>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 239 ELLAAFIDSAFPKIFSATYQLWNELPSTVF 328
           +LL++ +  AFP I +A+Y LWN   S +F
Sbjct: 27  QLLSSLV--AFPMIIAASYALWNARVSKLF 54


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 263 SAFPKIFSATYQLWNELPSTVFLERYDISFFK 358
           S  P + S+TY++ +++     + + D SFFK
Sbjct: 335 SLLPSVLSSTYKMLDDMELMYIMNKQDHSFFK 366


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 81  APRSFTVAKPIKKTLSLN*EKTTPHFKGPRYFVATIFIIPPLA-IGAEFVHIIWNCLLRS 257
           APRS    +P+  + +L+    TP   G  +   ++ I P L+ I  + VH+  N + + 
Sbjct: 113 APRSSKSGQPLPSSRALS-ALFTPSPSG--HATCSLLIAPFLSFIYDDIVHVPSNRIFKR 169

Query: 258 STVRFQRSFLLRTSSGMNSPPRCF 329
                 ++  L    G NS P CF
Sbjct: 170 DFYGNDKAMPLPCCRGDNSHPECF 193


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
           protein 1 protein.
          Length = 1852

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 PHFKGPRYFVATIFIIPPLAI 212
           P F  P + + T+  +PPLA+
Sbjct: 234 PQFARPEWMICTVLPVPPLAV 254


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein (
           C.elegans RNA polymeraseII largest subunit (ama-1 IV)
           gene, complete cds. ).
          Length = 1859

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 150 PHFKGPRYFVATIFIIPPLAI 212
           P F  P + + T+  +PPLA+
Sbjct: 234 PQFARPEWMICTVLPVPPLAV 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,079,123
Number of Sequences: 27780
Number of extensions: 151305
Number of successful extensions: 407
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)