Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0903
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    20   7.7  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    20   7.7  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    20   7.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   7.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 195 IPPLAIGAEFVHIIW 239
           +  L++G+EF+  IW
Sbjct: 80  VETLSVGSEFIKNIW 94


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 195 IPPLAIGAEFVHIIW 239
           +  L++G+EF+  IW
Sbjct: 80  VETLSVGSEFIKNIW 94


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 305 NELPSTVFLERYDISFFK 358
           NEL  + +LE+Y  + FK
Sbjct: 315 NELQDSFWLEQYSWALFK 332


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 305 NELPSTVFLERYDISFFK 358
           NEL  + +LE+Y  + FK
Sbjct: 283 NELQDSFWLEQYSWALFK 300


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 195 IPPLAIGAEFVHIIW 239
           +  L++G+EF+  IW
Sbjct: 19  VETLSVGSEFIKNIW 33


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 54  REYREYRETSRERSRDR 70


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 302 REYREYRETSRERSRDR 318


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 176 RSHHFYHPTSRHRSRVR 226
           R +  Y  TSR RSR R
Sbjct: 303 REYREYRETSRERSRDR 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,437
Number of Sequences: 438
Number of extensions: 1910
Number of successful extensions: 25
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)