Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0903
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54710.1 68418.m06813 ankyrin repeat family protein contains ...    28   2.1  
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN...    28   2.1  
At5g38710.1 68418.m04682 proline oxidase, putative / osmotic str...    27   3.8  
At1g27580.1 68414.m03361 F-box family protein similar to F-box p...    27   3.8  
At1g27540.1 68414.m03357 F-box family protein similar to F-box p...    27   3.8  
At5g41950.1 68418.m05108 expressed protein                             26   6.6  
At4g00880.1 68417.m00119 auxin-responsive family protein similar...    26   6.6  
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t...    26   8.7  

>At5g54710.1 68418.m06813 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 598

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 144 TTPHFKGPRYFVATIFIIPPLAIGAEFVHI 233
           T PH +G ++ V T   I  +A+G+ FV++
Sbjct: 528 TVPHNEGSKWLVYTTSAIASVALGSMFVYV 557


>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
           topoisomerase II / DNA gyrase (TOP2) identical to
           SP|P30182 DNA topoisomerase II (EC 5.99.1.3)
           {Arabidopsis thaliana}
          Length = 1473

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 346 YVIALEKHRGGEFIPELVRSRKDLWKRTVDERSKQF-QIIWTNSAPMARGG 197
           Y+ A  K R  + +P L     D W+  V     QF Q+ + NS    +GG
Sbjct: 276 YLSAANKSRTEDPLPRLTEKVNDRWEVCVSLSEGQFQQVSFVNSIATIKGG 326


>At5g38710.1 68418.m04682 proline oxidase, putative / osmotic
           stress-responsive proline dehydrogenase, putative
           similar to proline oxidase, mitochondrial precursor
           (Osmotic stress- induced proline dehydrogenase)
           [Arabidopsis thaliana] SWISS-PROT:P92983
          Length = 476

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 239 PDNMDELCSDGERWDDKNGGYEVPWSL 159
           P N+ +  SD  RW  KN  +++PW L
Sbjct: 181 PMNVLKRVSDLLRWQYKNPNFKLPWKL 207


>At1g27580.1 68414.m03361 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; confirmed by FLcDNA GI:16604421; contains
           uncharacterized Arabidoppsis domain shared by 33
           Arabidopsis proteins;simlar to unknown protein
           GB:AAC63676
          Length = 364

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 209 GERW-DDKNGGYEVPWSLKM 153
           G  W DDKNG Y V W  +M
Sbjct: 123 GRLWVDDKNGNYVVVWQFEM 142


>At1g27540.1 68414.m03357 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; confirmed by FLcDNA GI:16604421; contains
           uncharacterized Arabidoppsis domain shared by 33
           Arabidopsis proteins
          Length = 413

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 209 GERW-DDKNGGYEVPWSLKM 153
           G  W DDKNG Y V W  +M
Sbjct: 172 GRLWVDDKNGNYVVVWQFEM 191


>At5g41950.1 68418.m05108 expressed protein
          Length = 565

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/34 (23%), Positives = 18/34 (52%)
 Frame = -2

Query: 292 RSRKDLWKRTVDERSKQFQIIWTNSAPMARGGMI 191
           +  ++LW++  D   K  Q+ W +S  +   G++
Sbjct: 292 KEAEELWEQAADNYEKAVQLNWNSSQALNNWGLV 325


>At4g00880.1 68417.m00119 auxin-responsive family protein similar to
           small auxin up RNA (GI:546362) {Arabidopsis thaliana}
          Length = 122

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 134 LGKDNTSF*GTTVLRSHHFYH 196
           + ++NT F GT +L  HH +H
Sbjct: 93  IDRENTRFLGTNLLDHHHHHH 113


>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
           programmed cell death 4 protein [Gallus gallus]
           GI:12958564; contains Pfam profile PF02847: MA3 domain
          Length = 702

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 358 FEEGYVIALEKHRGGEFIPELVRSRKDL 275
           F+E  V  + ++   + IPEL+RS +DL
Sbjct: 415 FKEDIVTIIHEYFNSDDIPELIRSLEDL 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,678,707
Number of Sequences: 28952
Number of extensions: 143650
Number of successful extensions: 423
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)