Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0902
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.0  
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    26   3.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   3.6  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   6.2  
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    25   6.2  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   8.3  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 208 YIWFDFIIKAPFDCVVLCKFVVQNNRIGLDEA 113
           Y WFDF ++   D  V  ++    N   LDEA
Sbjct: 796 YDWFDFFLRCGVDFTVCNRYTHNFNNEHLDEA 827


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 472 YLNI*HTYSNPPYNAVYWFRVIGKRDLGVF 561
           Y N+ H        +VY  +V+G + LG+F
Sbjct: 308 YFNVKHKLGQGASGSVYLAKVVGGKQLGIF 337


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +1

Query: 4   RHEELEMLLIYSKTVKDFFTDFIXDKVVNAFLPQT*KLHQALSYYSEQ 147
           RHEEL+ L       K+F +++  + + N+ L Q  +L + L   ++Q
Sbjct: 827 RHEELKNLSTLKSLAKEFLSNYKEENLENSTLVQLKQLSKHLLSETKQ 874


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 311 T*KLWQIFCFNLKLRLFGYYF*LSMI 234
           T K+W    F L+  LFG+Y  +S +
Sbjct: 77  TIKIWSALTFRLECTLFGHYRGISQV 102


>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 589 DHLYITRYTGILLNRAFL*RGTNIPRY-REDYCMYV 485
           DHL+ T Y G  L R  L    NI    RED   Y+
Sbjct: 160 DHLHATAYQGHPLGRTILGPKENIESLTREDLLQYI 195


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 366 NIPNDISVCNLTCISLTTNLKIMAN 292
           NIP D  VCN+    +T  L + AN
Sbjct: 536 NIPEDGDVCNIYLEIITNALDVCAN 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,176,158
Number of Sequences: 5004
Number of extensions: 41679
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)