Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0902
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   3.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 375 YVTNIPNDISVCNLTCISLTTNLK 304
           Y T+   + S  N TCI +  NL+
Sbjct: 187 YTTDCTIEYSTGNFTCIQIVFNLR 210


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/23 (26%), Positives = 17/23 (73%)
 Frame = -3

Query: 481 YLNIIFVISLQT*FIYYYLSIVL 413
           Y++I FV+ ++   +YY+ ++++
Sbjct: 218 YIDITFVVIIRRRTLYYFFNLIV 240


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 311 LVVRDIHVRLQTLISLGILVTYIL 382
           LV+ D ++ ++ +ISL  L +Y++
Sbjct: 405 LVISDDNIHIKGVISLNKLTSYVI 428


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 578 HNALYGNTPKSR 543
           +N LYG+TP SR
Sbjct: 87  NNHLYGSTPDSR 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,603
Number of Sequences: 438
Number of extensions: 3202
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)