Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0901
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 150 9e-37
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 130 8e-31
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 56 2e-08
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 56 2e-08
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 55 5e-08
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 54 6e-08
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 54 6e-08
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 53 2e-07
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 52 2e-07
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 52 4e-07
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 51 6e-07
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 50 1e-06
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 48 7e-06
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 47 1e-05
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 46 2e-05
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 46 2e-05
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 46 3e-05
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 46 3e-05
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 45 4e-05
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 45 5e-05
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 45 5e-05
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 44 7e-05
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 44 1e-04
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 43 2e-04
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 42 3e-04
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 42 5e-04
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 42 5e-04
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 41 6e-04
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 40 0.001
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 40 0.001
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 40 0.001
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 40 0.002
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 40 0.002
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 39 0.002
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 39 0.002
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 39 0.003
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 39 0.003
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 39 0.003
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 38 0.004
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 38 0.004
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 38 0.004
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 38 0.006
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 38 0.006
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 38 0.008
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 38 0.008
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 37 0.013
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 36 0.018
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 36 0.018
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 36 0.023
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 36 0.023
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 36 0.023
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 36 0.023
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 36 0.023
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 36 0.031
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 35 0.041
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 35 0.041
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 35 0.041
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 35 0.041
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 35 0.054
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 35 0.054
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 29 0.083
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 34 0.094
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 34 0.094
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 34 0.094
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 34 0.094
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 34 0.094
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.094
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.094
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 33 0.12
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 33 0.12
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 33 0.12
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 33 0.12
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 33 0.16
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 33 0.16
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 33 0.22
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 33 0.22
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 33 0.22
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 33 0.22
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 32 0.29
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 32 0.29
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 32 0.29
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 32 0.29
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 32 0.29
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 32 0.29
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 32 0.29
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 32 0.38
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 32 0.38
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 32 0.38
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 32 0.38
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 32 0.38
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 32 0.38
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 32 0.38
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 32 0.38
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 32 0.38
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 32 0.38
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 32 0.38
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 32 0.38
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 31 0.50
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 31 0.50
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 31 0.66
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 31 0.87
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 31 0.87
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 0.87
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 31 0.87
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.87
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.87
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 30 1.2
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 30 1.2
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 30 1.2
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 30 1.2
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 30 1.5
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 30 1.5
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 30 1.5
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 30 1.5
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 30 1.5
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 30 1.5
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 29 2.0
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 29 2.0
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 29 2.0
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 2.0
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 29 2.0
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 29 2.0
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 29 2.0
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 29 2.0
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 29 2.7
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 29 3.5
At4g32940.1 68417.m04687 vacuolar processing enzyme gamma / gamm... 29 3.5
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 3.5
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 29 3.5
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 28 4.7
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 28 4.7
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 28 4.7
At1g69400.2 68414.m07968 transducin family protein / WD-40 repea... 28 6.1
At1g69400.1 68414.m07969 transducin family protein / WD-40 repea... 28 6.1
At1g29980.2 68414.m03666 expressed protein contains Pfam profile... 28 6.1
At1g29980.1 68414.m03667 expressed protein contains Pfam profile... 28 6.1
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 27 8.1
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 27 8.1
At3g17940.1 68416.m02284 aldose 1-epimerase family protein simil... 27 8.1
At2g39680.1 68415.m04868 expressed protein 27 8.1
At2g08986.1 68415.m01009 hypothetical protein 27 8.1
At1g09000.1 68414.m01004 NPK1-related protein kinase, putative (... 27 8.1
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 150 bits (363), Expect = 9e-37
Identities = 71/143 (49%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Frame = +2
Query: 224 VALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS-MVAAAGFQHIRLYDLSS 400
V L T YDHTI+ W+A +G C RT+Q+PDS VN LEI+P +AAA HIRL+D++S
Sbjct: 6 VILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRLFDVNS 65
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPV 580
+P PV T++ + NV VGFQ + WMY+G ED T +IWD RA CQK ++ A V
Sbjct: 66 NSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRA---PGCQKEYESVAAV 122
Query: 581 NAVMLHPDQSQIMVGDQSGIIHI 649
N V+LHP+Q++++ GDQ+G I +
Sbjct: 123 NTVVLHPNQTELISGDQNGNIRV 145
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 130 bits (314), Expect = 8e-31
Identities = 67/146 (45%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP-TSMVAAAGFQHIRLYDL 394
S V L T +D TI+LWQA +G C + ++PD VN LE++P + AA HIRL+DL
Sbjct: 9 SPVYLATASHDQTIRLWQARTGRCYFSFRYPDLHVNRLELTPEKGKLVAACNPHIRLFDL 68
Query: 395 SSANPD-PVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
S NP PV F +KNV VGFQ G MY+G ED + +IWD R CQ+ F+
Sbjct: 69 RSYNPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRV---RECQREFRSV 125
Query: 572 APVNAVMLHPDQSQIMVGDQSGIIHI 649
+PVN V+LHP+Q++++ GDQ+G I +
Sbjct: 126 SPVNTVVLHPNQTELISGDQNGNIRV 151
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = +2
Query: 290 LRTMQHPDSQVNSLEISPTS--MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGF 463
L +Q +S + +SP + + A+ + +++++L + V T + + V F
Sbjct: 210 LHKLQAHNSHILKCLLSPGNKYLATASSDKTVKIWNLDGFKLEKVLTGHE--RWVWDCDF 267
Query: 464 QKNGTWMYTGGEDCTARIWDPRA 532
+G ++ T D TAR+W RA
Sbjct: 268 SMDGEYLVTASSDTTARLWSMRA 290
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
+ TG D T++LW +G C+R S V SL +SP A+G + I ++DLS+A
Sbjct: 514 IATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTA 573
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+T + V + + G+ + +G DCT ++WD
Sbjct: 574 R--CITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWD 611
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 56.4 bits (130), Expect = 2e-08
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS-PTSMVAAAGF-QHIRLYDLSSA 403
L +G D IK+W+ +GVC+R V SL S S + + F Q R++ L S
Sbjct: 278 LASGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARIHGLKSG 337
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQ------ 565
+ F + V+ F +G+ + T DCT ++WD + T C + F+
Sbjct: 338 K--LLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKT---TDCLQTFKPPPPLR 392
Query: 566 -VQAPVNAVMLHPDQSQ-IMVGDQSGIIHI 649
A VN++ L P ++ I+V +++ I+I
Sbjct: 393 GTDASVNSIHLFPKNTEHIVVCNKTSSIYI 422
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 54.8 bits (126), Expect = 5e-08
Identities = 34/149 (22%), Positives = 61/149 (40%)
Frame = +2
Query: 179 HKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVA 358
H A D+ A ++V ++ G IKLW +R S +++E P
Sbjct: 57 HTSAVDSVA-FDSAEVLVLAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFL 115
Query: 359 AAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAP 538
A+G L + T++ S+ +S + F +G W+ +GG D ++WD A
Sbjct: 116 ASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTAGK 175
Query: 539 RTRCQKIFQVQAPVNAVMLHPDQSQIMVG 625
K + P+ ++ HP + + G
Sbjct: 176 LLHEFKFH--EGPIRSLDFHPLEFLLATG 202
Score = 48.0 bits (109), Expect = 5e-06
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSAN 406
+TGG D+ + LW L ++ S V+S+ ++ AG I+L+D+ A
Sbjct: 32 ITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWDVEEAK 91
Query: 407 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQA-PVN 583
V F N S V F G ++ +G D +IWD R + C + ++ + ++
Sbjct: 92 --MVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIR---KKGCIQTYKGHSRGIS 146
Query: 584 AVMLHPDQSQIMVGDQSGIIHI 649
+ PD ++ G ++ +
Sbjct: 147 TIRFTPDGRWVVSGGLDNVVKV 168
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/156 (22%), Positives = 66/156 (42%)
Frame = +2
Query: 158 NCLNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI 337
N + + + +G + + S+V + G TIKLW +RT+ S S++
Sbjct: 50 NAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109
Query: 338 SPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 517
P A+G L + T++ ++ V+ + F +G W+ +GGED ++
Sbjct: 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
Query: 518 WDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVG 625
WD A K + Q + ++ HP + + G
Sbjct: 170 WDLTAGKLLTEFKSHEGQ--IQSLDFHPHEFLLATG 203
Score = 52.0 bits (119), Expect = 3e-07
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYD 391
S LVTGG DH + LW + ++ S ++S+ + ++ AAG I+L+D
Sbjct: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWD 87
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
L A V T N V F G + +G D +IWD R + C ++
Sbjct: 88 LEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KKGCIHTYKGH 142
Query: 572 A-PVNAVMLHPDQSQIMVGDQSGIIHI 649
VN + PD ++ G + I+ +
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKV 169
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGF--QHIRLYDLSS 400
+V+GG D+ +K+W +G L + + Q+ SL+ P + A G + ++ +DL +
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 54.4 bits (125), Expect = 6e-08
Identities = 35/156 (22%), Positives = 66/156 (42%)
Frame = +2
Query: 158 NCLNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI 337
N + + + +G + + S+V + G TIKLW +RT+ S S++
Sbjct: 50 NAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109
Query: 338 SPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 517
P A+G L + T++ ++ V+ + F +G W+ +GGED ++
Sbjct: 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKV 169
Query: 518 WDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVG 625
WD A K + Q + ++ HP + + G
Sbjct: 170 WDLTAGKLLTEFKSHEGQ--IQSLDFHPHEFLLATG 203
Score = 52.0 bits (119), Expect = 3e-07
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYD 391
S LVTGG DH + LW + ++ S ++S+ + ++ AAG I+L+D
Sbjct: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWD 87
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
L A V T N V F G + +G D +IWD R + C ++
Sbjct: 88 LEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KKGCIHTYKGH 142
Query: 572 A-PVNAVMLHPDQSQIMVGDQSGIIHI 649
VN + PD ++ G + I+ +
Sbjct: 143 TRGVNVLRFTPDGRWVVSGGEDNIVKV 169
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGF--QHIRLYDLSS 400
+V+GG D+ +K+W +G L + + Q+ SL+ P + A G + ++ +DL +
Sbjct: 158 VVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLET 216
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 3/160 (1%)
Frame = +2
Query: 173 KFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI-SPTS 349
K H L G +V +T +D T+K+W + +C+ T+ S + SLE T
Sbjct: 936 KGHDSQVSCVKMLSGERV--LTAAHDGTVKMWDVRTDMCVATVGRCSSAILSLEYDDSTG 993
Query: 350 MVAAAGFQHI-RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDP 526
++AAAG + ++D+ S + + +K + + ++ + TG +D TAR+W
Sbjct: 994 ILAAAGRDTVANIWDIRSGK--QMHKLKGHTKWIRSIRMVED--TLITGSDDWTARVW-- 1047
Query: 527 RAAPRTRCQKIFQVQA-PVNAVMLHPDQSQIMVGDQSGII 643
+ R C + A PV +V P I+ G G++
Sbjct: 1048 -SVSRGSCDAVLACHAGPVQSVEYSPFDKGIITGSADGLL 1086
Score = 34.3 bits (75), Expect = 0.071
Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLE-ISPTSMVAAAGFQ 373
T ++ + +V+G D ++ +W + L ++ DSQV+ ++ +S ++ AA
Sbjct: 901 TVRAISSDRGKIVSGSDDLSVIVWDKQTTQLLEELKGHDSQVSCVKMLSGERVLTAAHDG 960
Query: 374 HIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA 532
++++D+ + V T S + + + + + G D A IWD R+
Sbjct: 961 TVKMWDVRT--DMCVATVGRCSSAILSLEYDDSTGILAAAGRDTVANIWDIRS 1011
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 455 VGFQKNGTWMYTGGEDCTARIWDP 526
VG +++ + +G DC +IWDP
Sbjct: 861 VGDREDAGFFISGSTDCLVKIWDP 884
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/142 (20%), Positives = 58/142 (40%)
Frame = +2
Query: 200 TASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHI 379
+ + +V ++ G IKLW +R S +++E P A+G
Sbjct: 12 SVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDT 71
Query: 380 RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKI 559
L + + T++ ++ +S + F +G W+ +GG D ++WD A K
Sbjct: 72 NLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKC 131
Query: 560 FQVQAPVNAVMLHPDQSQIMVG 625
+ P+ ++ HP + + G
Sbjct: 132 H--EGPIRSLDFHPLEFLLATG 151
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 51.6 bits (118), Expect = 4e-07
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQ--HIRLYDLSSA 403
+V+ YD TIKLW H G C T+ S N++ +S + +G ++RL+D+ +
Sbjct: 331 VVSAAYDRTIKLWDLHKGYCTNTVLF-TSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTG 389
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAP--RTRCQKIFQVQAP 577
++ S V+ V +NG + T G D ++D R T ++ +
Sbjct: 390 K--LLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASN 447
Query: 578 VNAVMLHPDQSQIMVGDQSGIIHI 649
+ + PD + G G +H+
Sbjct: 448 WSRSCISPDDDYVAAGSADGSVHV 471
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 5/145 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT----SMVAAAGFQHIRLYDLS 397
L TGG D +K+W +SG ++++ S N L+++ T S++AA ++ ++D+S
Sbjct: 246 LFTGGQDRAVKMWDTNSGTLIKSLY--GSLGNILDMAVTHDNKSVIAATSSNNLFVWDVS 303
Query: 398 SANPDPVTTFEDISKNVSRVGFQK-NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQA 574
S T + V V K + + + D T ++WD + C +
Sbjct: 304 SGRVRHTLTGH--TDKVCAVDVSKFSSRHVVSAAYDRTIKLWD---LHKGYCTNTVLFTS 358
Query: 575 PVNAVMLHPDQSQIMVGDQSGIIHI 649
NA+ L D + G G + +
Sbjct: 359 NCNAICLSIDGLTVFSGHMDGNLRL 383
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 51.2 bits (117), Expect = 6e-07
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 3/147 (2%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYD 391
S LVTGG DH + LW + ++ S ++S+ + + AAG I+L+D
Sbjct: 121 SSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWD 180
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
L A V T N V F G + +G D +IWD R + C ++
Sbjct: 181 LEEAK--VVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIR---KKGCIHTYKGH 235
Query: 572 A-PVNAVMLHPDQSQIMVGDQSGIIHI 649
VN + PD I+ G + ++ +
Sbjct: 236 TRGVNVLRFTPDGRWIVSGGEDNVVKV 262
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/122 (22%), Positives = 52/122 (42%)
Frame = +2
Query: 158 NCLNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEI 337
N + + + +G + + S+ + G TIKLW +RT+ S S+
Sbjct: 143 NAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNF 202
Query: 338 SPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 517
P A+G L + T++ ++ V+ + F +G W+ +GGED ++
Sbjct: 203 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKV 262
Query: 518 WD 523
WD
Sbjct: 263 WD 264
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGF--QHIRLYDLSS 400
+V+GG D+ +K+W +G L + + ++ SL+ P + A G + ++ +DL +
Sbjct: 251 IVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLET 309
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS-PTSMVAAAGFQHI-RLYDLSSA 403
+V+G +D T+++W +G CL+ + V +++ + S++ ++ + + R++D S
Sbjct: 128 IVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWD-SGT 186
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 535
T +D + VS V F NG ++ G D T R+W+ +A
Sbjct: 187 GHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSA 230
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS-MVAAAGF-QHIRLYDLSSA 403
+V+ D T+KLW +G ++T+ + + +P S M+ + F + +R++D+++
Sbjct: 86 IVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTG 145
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK--IFQVQAP 577
V S V+ V F ++G+ + + D RIWD C K I P
Sbjct: 146 KCLKVLPAH--SDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTG---HCVKTLIDDENPP 200
Query: 578 VNAVMLHPDQSQIMVG 625
V+ V P+ I+VG
Sbjct: 201 VSFVRFSPNGKFILVG 216
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 293 RTMQHPDSQVNSLEISPTS--MVAAAGFQHIRLYDLSSANP---DPVTTFEDISKNVSRV 457
+T+ + V+S++ S + +A+ + IR Y +++ N +PV F +S V
Sbjct: 18 QTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77
Query: 458 GFQKNGTWMYTGGEDCTARIWD 523
F + ++ + +D T ++WD
Sbjct: 78 AFSSDARFIVSASDDKTLKLWD 99
Score = 27.5 bits (58), Expect = 8.1
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQ-HPDSQ-VNSLEISPTS---MVAAAGFQHIRLYDL 394
++ G D+T++LW S L+T H ++Q S S T+ +V+ + + +++L
Sbjct: 213 ILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWEL 272
Query: 395 SSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
+S + E ++ V V + +G D T RIW
Sbjct: 273 NSKK--LLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIW 312
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 47.6 bits (108), Expect = 7e-06
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA-GFQHI-RLYDLSSA 403
L T YD T +LW ++G L + V + +AA+ G + R++DL +
Sbjct: 354 LGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTG 413
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR 529
+ F+ K V V F NG + +GGED RIWD R
Sbjct: 414 RS--ILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLR 453
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 422 TFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
TFE ++RV F +G ++ T D T R+WD
Sbjct: 334 TFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWD 367
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDL--SSA 403
L T YD + +W ++++ +S+V SL+I+ S A H R L SS
Sbjct: 481 LATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIAT-VSHDRTIKLWTSSG 539
Query: 404 NPD 412
N D
Sbjct: 540 NDD 542
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 46.8 bits (106), Expect = 1e-05
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 203 ASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH 376
A G +T G D TI+LW H G+ ++T + +V + ++ + G +
Sbjct: 24 ARFNGDGNYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFCSCGGDRQ 83
Query: 377 IRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 556
+ +D+S+ + F V+ V F + + + + G D + R+WD R+ Q
Sbjct: 84 VYYWDVSTGR--VIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQI 141
Query: 557 IFQVQAPVNAVMLHPDQSQIMVGDQSGII 643
I V +V+L +++I+ G G +
Sbjct: 142 IDTFLDTVMSVVL--TKTEIIGGSVDGTV 168
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Frame = +2
Query: 236 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS--PTSMVAAAGFQHIRLYDLSSANP 409
TG D TIK+W +GV T+ QV L +S T M +A + ++ +DL
Sbjct: 187 TGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNK- 245
Query: 410 DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQ-KIFQVQAPVNA 586
+ ++ V + + TGG D R+WD RT+ Q + + V +
Sbjct: 246 -VIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWD----IRTKMQIFVLPHDSDVFS 300
Query: 587 VMLHPDQSQIMVGDQSGII 643
V+ P Q++ G I
Sbjct: 301 VLARPTDPQVITGSHDSTI 319
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP-TSMVAAAGFQHIRLYDLSSAN 406
++TG +D TIK W G + T+ + V ++ + P + +A +I+ + L
Sbjct: 310 VITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGE 369
Query: 407 --PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ ++ DI ++ V ++G M TGG+ WD
Sbjct: 370 FCHNMLSLQRDI---INAVAVNEDGV-MVTGGDKGGLWFWD 406
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT-SMVAAAGFQ 373
T S + + TGG D+ +K+W G T++ + + +SP S + G
Sbjct: 184 TAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMD 243
Query: 374 H-IRLYDLSSANPDP--VTTFE----DISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA 532
+ + ++D+ P V FE + KN+ + + +GT + G D IWD
Sbjct: 244 NKLCVWDMRPYAPQNRCVKIFEGHQHNFEKNLLKCSWSPDGTKVTAGSSDRMVHIWD--T 301
Query: 533 APRTRCQKIFQVQAPVNAVMLHPDQ 607
R K+ VN + HP +
Sbjct: 302 TSRRTIYKLPGHTGSVNECVFHPTE 326
Score = 45.2 bits (102), Expect = 4e-05
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Frame = +2
Query: 128 KNVLLRNKYANCLNN---KFHKMAG-DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLR 295
+ + L + +C N K HK A D + GSQ+ V+ D T++ W +G ++
Sbjct: 75 REIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQI--VSASPDKTVRAWDVETGKQIK 132
Query: 296 TMQHPDSQVNSL---EISPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQ 466
M S VNS P +++ + +L+D+ + TF D ++ V F
Sbjct: 133 KMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMRQRGA--IQTFPD-KYQITAVSFS 189
Query: 467 KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIM 619
++TGG D ++WD R T + Q + + L PD S ++
Sbjct: 190 DAADKIFTGGVDNDVKVWDLRKGEAT--MTLEGHQDTITGMSLSPDGSYLL 238
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQA--HSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSA 403
LVTG YDHT+K+W A H+ + + H + + + ++A AG ++++DL
Sbjct: 194 LVTGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPSGGLIATAGGNSVKVWDLIGG 253
Query: 404 NPDPVTTFEDISKNVS--RVGFQKNG-TWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQA 574
V + E +K V+ RV ++ + + + D +++D A T + A
Sbjct: 254 G-KMVCSMESHNKTVTSLRVARMESAESRLVSVALDGYMKVFDYGRAKVTYSMRF---PA 309
Query: 575 PVNAVMLHPDQSQIMVGDQSGII 643
P+ ++ L PD S ++G +G++
Sbjct: 310 PLMSLGLSPDGSTRVIGGSNGMV 332
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQHPD----SQVNSLEISPTSMVAAAGFQHIRLYDLSS 400
+TG +DH +K+W ++ + + P + ++S+ +S T + A +RL D++S
Sbjct: 120 ITGSFDHYVKVWDTNTSQVVVDFKMPGKVYRTAMSSMAMSHTLIAAGTDDVQVRLCDIAS 179
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTW-MYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP 577
T V V + + W +YTGG D R WD R A R Q Q
Sbjct: 180 GAFSH--TLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQLG 237
Query: 578 VNAVML 595
V +L
Sbjct: 238 VRPPIL 243
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQV 322
S+ L TGG D I+ W C R + + +Q+
Sbjct: 202 SEWVLYTGGCDGAIRFWDIRRAGCFRVLDNSQTQL 236
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 45.2 bits (102), Expect = 4e-05
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Frame = +2
Query: 236 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS--PTSMVAAAGFQHIRLYDLSSANP 409
TG D TIK+W +GV T+ QV L +S T M +A + ++ +DL
Sbjct: 193 TGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNK- 251
Query: 410 DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVN-- 583
+ ++ V + + TGG D R+WD RT+ Q IF + N
Sbjct: 252 -VIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWD----IRTKMQ-IFALSGHDNTV 305
Query: 584 -AVMLHPDQSQIMVGDQSGII 643
+V P Q++ G I
Sbjct: 306 CSVFTRPTDPQVVTGSHDTTI 326
Score = 36.3 bits (80), Expect = 0.018
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP-TSMVAAAGFQHIRLYDLSSAN 406
+VTG +D TIK W G + T+ H V ++ + P + A+A + + + L
Sbjct: 317 VVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKGE 376
Query: 407 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
++ + ++G M TGG++ + WD
Sbjct: 377 -FCHNMLSQQKTIINAMAVNEDGV-MVTGGDNGSIWFWD 413
Score = 28.7 bits (61), Expect = 3.5
Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
L+TGG D ++W + + + + D+ V S+ PT G I+ +DL
Sbjct: 275 LLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYG 334
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIF-QVQAPV 580
++T K+V + + D T + P+ C + Q + +
Sbjct: 335 K--TMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKG---EFCHNMLSQQKTII 389
Query: 581 NAVMLHPDQSQIMVGDQSGI 640
NA+ ++ D + GD I
Sbjct: 390 NAMAVNEDGVMVTGGDNGSI 409
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/109 (23%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = +2
Query: 206 SLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRL 385
SL ++ +G +D ++++W S C++T++H D V L T++ + +G + +
Sbjct: 262 SLALDMTSIFSGSWDMSVRIWDRSSMKCVKTLRHSD-WVWGLAPHETTLASTSG-SDVYI 319
Query: 386 YDLSSANPDPVTTFEDISKNVS-RVGFQKNGTWMYTGGEDCTARIWDPR 529
+D+SS P+ D + + + G +++TGGED ++++ R
Sbjct: 320 WDVSSET--PLAIIPDAHEGTTYSLARSHTGDFLFTGGEDGGIKMFEIR 366
Score = 31.5 bits (68), Expect = 0.50
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Frame = +2
Query: 200 TASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAA--GFQ 373
T L S + T GYD +++W G+ + + + +L +VA GF
Sbjct: 167 TVFLLASAKLVFTSGYDSIVRMWDMEEGLSIAASKPLGCTIRALAADTKLLVAGGTDGFI 226
Query: 374 HI--------RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
H L+DL+ + T F + T +++G D + RIWD
Sbjct: 227 HCWKSLDGLRNLFDLTGFQKEK-TEFRLWGHEGPITSLALDMTSIFSGSWDMSVRIWD 283
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 44.8 bits (101), Expect = 5e-05
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAA 364
DT S G+ V +VTG D T++LW A S C+ + + ++ + S V+ +
Sbjct: 408 DTCVSSSGN-VLIVTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGS 466
Query: 365 GFQHIRLYDLSSANPD---PV-----TTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
G + ++++ L + D P+ + K+++ V +N + + TG ED TA IW
Sbjct: 467 GDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSEDRTASIW 526
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/104 (21%), Positives = 46/104 (44%), Gaps = 6/104 (5%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS----MVAAAGFQHIRLYDLS 397
L T G D + +W G C + V+S+ P S +++ + +R++DL+
Sbjct: 117 LATAGADRKVLVWDVDGGFCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLN 176
Query: 398 SANPDP--VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ N + + E V+ + ++G +++ G D +WD
Sbjct: 177 AKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNLWD 220
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQ-HPDSQVNSLEISP-TSMVAAAGFQHIRLYDLSSA 403
++T D T+K+W G CL+T + H S + + I+ T V+ ++L++++++
Sbjct: 556 VMTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTS 615
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAA 535
+ + T++ V + K + TGG D +W A
Sbjct: 616 --ECIATYDQHEDKVWALAVGKKTEMIATGGGDAVINLWHDSTA 657
Score = 32.7 bits (71), Expect = 0.22
Identities = 30/157 (19%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT-SMVAAAGF- 370
T +L L + G+ I++W + C+R+ + + V + + ++A AG
Sbjct: 64 TALALSPDDKLLFSAGHSRQIRVWDLETLKCIRSWKGHEGPVMGMACHASGGLLATAGAD 123
Query: 371 QHIRLYDLSSANPDPVTTFEDISKNVSRVGF--QKNGTWMYTGGEDCTARIWDPRAA-PR 541
+ + ++D+ F VS + F N + +G +D T R+WD A
Sbjct: 124 RKVLVWDVDGG--FCTHYFRGHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTE 181
Query: 542 TRCQKIFQVQ-APVNAVMLHPDQSQIMVGDQSGIIHI 649
+C I + + V ++ L D + + ++++
Sbjct: 182 KKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVNL 218
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQHPD----SQVNSLEISPTSMVAAAGFQHIRLYDLSS 400
+TG +DH +K+W ++ + + P + ++S+ +S T + A +RL D++S
Sbjct: 120 ITGSFDHYLKVWDTNTAQAVVDFKMPGKVYRTAMSSMAMSHTLIAAGTEDVQVRLCDIAS 179
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTW-MYTGGEDCTARIWDPRAA 535
T V V + + W +YTGG D R WD R A
Sbjct: 180 GAFS--HTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRA 223
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQV 322
S+ L TGG D I+ W C R + +Q+
Sbjct: 202 SEWVLYTGGCDGAIRFWDIRRAGCFRVLDQSQTQL 236
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 43.6 bits (98), Expect = 1e-04
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 2/153 (1%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSM-VAAAGFQ 373
T L G Q L + ++LW SG ++T++ S V S E+S + A
Sbjct: 150 TLTWLHGDQTILSSCTDIGGVRLWDVRSGKIVQTLE-TKSPVTSAEVSQDGRYITTADGS 208
Query: 374 HIRLYDLSSANPDPVTTFEDISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRC 550
++ +D AN + D+ N+ + K+G GGED R++D C
Sbjct: 209 TVKFWD---ANHFGLVKSYDMPCNIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGC 265
Query: 551 QKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
K PV+ V P G + G I I
Sbjct: 266 NK--GHHGPVHCVRFAPTGESYASGSEDGTIRI 296
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 42.7 bits (96), Expect = 2e-04
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH 376
T GG + + TG D TIK+W+ G +R ++ +NSL +S ++ F H
Sbjct: 245 TCVKWGGDGI-IYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDH 303
Query: 377 I-RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQ 553
R Y N + E +K + + +G +D T +W+P + + + +
Sbjct: 304 TGRQY---PPNEEKQKALERYNKTKG-----DSPERLVSGSDDFTMFLWEPSVSKQPK-K 354
Query: 554 KIFQVQAPVNAVMLHPD 604
++ Q VN V PD
Sbjct: 355 RLTGHQQLVNHVYFSPD 371
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
++TG D +K+W + +CL + + + + L +S + + A+ IR++ L
Sbjct: 320 VITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDG 379
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMY---TGGEDCTARIWDPR 529
P++ + V+ + F +Y + +D T RIWD R
Sbjct: 380 M--PISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWDAR 422
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +2
Query: 257 IKLWQAHSGVCLRTMQHPDSQVNSLEISPTSM-VAAAGFQHIRLYDLSSANPDPVTTFED 433
++LW SG ++T++ S V S E+S + A ++ +D AN + D
Sbjct: 170 VRLWDVRSGKIVQTLE-TKSPVTSAEVSQDGRYITTADGSTVKFWD---ANHFGLVKSYD 225
Query: 434 ISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQS 610
+ N+ + K+G GGED R++D C K PV+ V P
Sbjct: 226 MPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNK--GHHGPVHCVRFTPTGL 283
Query: 611 QIMVGDQSGIIHI 649
G + G I I
Sbjct: 284 SYASGSEDGTIRI 296
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSAN 406
V GG D ++++ ++G + + V+ + +PT + A+G + IR++ + AN
Sbjct: 244 VAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
Query: 407 PD 412
P+
Sbjct: 304 PE 305
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 41.5 bits (93), Expect = 5e-04
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Frame = +2
Query: 257 IKLWQAHSGVCLRTMQHPDSQVNSLEISPTSM-VAAAGFQHIRLYDLSSANPDPVTTFED 433
++LW SG ++T++ S V S E+S + A ++ +D AN + D
Sbjct: 170 VRLWDVRSGKIVQTLE-TKSPVTSAEVSQDGRYITTADGSTVKFWD---ANHFGLVKSYD 225
Query: 434 ISKNVSRVGFQ-KNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQS 610
+ N+ + K+G GGED R++D C K PV+ V P
Sbjct: 226 MPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNK--GHHGPVHCVRFTPTGL 283
Query: 611 QIMVGDQSGIIHI 649
G + G I I
Sbjct: 284 SYASGSEDGTIRI 296
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSAN 406
V GG D ++++ ++G + + V+ + +PT + A+G + IR++ + AN
Sbjct: 244 VAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTPAN 303
Query: 407 PD 412
P+
Sbjct: 304 PE 305
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 41.1 bits (92), Expect = 6e-04
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +2
Query: 311 DSQVNSLEISPTS--MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWM 484
D VN PT +V+ A + ++L+ ++ V T NVS V F +
Sbjct: 204 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDII 263
Query: 485 YTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGII 643
+ ED + R+WD A RT Q + + +HP+ + + G SG+I
Sbjct: 264 VSNSEDKSIRVWD--ATKRTGLQTFRREHDRFWILAVHPEMNLLAAGHDSGMI 314
Score = 33.9 bits (74), Expect = 0.094
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS--MVAAAGFQHIRLYD 391
SQ V+GG D+ IK+W + CL T+ + +++ +V+A+ Q IR+++
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN 121
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
S V T + V F + + D T R+WD
Sbjct: 122 WQSRTCVSVLTGH--NHYVMCASFHPKEDLVVSASLDQTVRVWD 163
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGF--QHIRLYDLSSA 403
L+TG D T+KLW+ +RT V +L P+ ++AA+ +R++D+ +
Sbjct: 33 LLTGSLDETVKLWRPDELDLVRTNTGHSLGVAALAAHPSGIIAASSSIDSFVRVFDVDT- 91
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWM-YTGGEDCTARIWD 523
+ E V + F+ GT + GG + ++WD
Sbjct: 92 -NATIAVLEAPPSEVWGMQFEPKGTILAVAGGSSASVKLWD 131
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Frame = +2
Query: 206 SLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--I 379
SL Q L + +D TIK+W+ CL ++ D VNS+ +S T + +G +
Sbjct: 213 SLNDEQGLLYSASWDRTIKVWRIADSKCLESIPAHDDAVNSV-VSTTEAIVFSGSADGTV 271
Query: 380 RLYDLSSANP-DPVTTFEDISKN---VSRVGFQKNGTWMYTGGEDCTARIWD 523
+ + T + ++K V+ + KNG +Y G D W+
Sbjct: 272 KAWKRDQQGKYTKHTLMQTLTKQESAVTALAVSKNGAAVYFGSSDGLVNFWE 323
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
++TG D +K+W + CL + + + + L +S ++ A+ IR++ L
Sbjct: 260 VITGSDDRLVKVWSMDTAYCLASCRGHEGDITDLAVSSNNIFIASASNDCVIRVWRLPDG 319
Query: 404 NPDPVTTFEDISKNVSRVGFQ-KNGT--WMYTGGEDCTARIWDPRAA 535
PV+ + V+ + F + G+ + + +D T RIWD R A
Sbjct: 320 L--PVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWDARGA 364
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS--PTSMVAAAGFQHIRLYDLSSA 403
+V+G +D TI++W+ +G C+R ++ ++S+ + + +V+A+ +++D +
Sbjct: 143 IVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWD-AKE 201
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARI 517
T +D S VS F NG ++ D T ++
Sbjct: 202 GTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKL 239
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Frame = +2
Query: 290 LRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQK 469
L+T++ + ++ ++ S + A+ + S+ N + +E S +S + +
Sbjct: 36 LKTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSS 95
Query: 470 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP-VNAVMLHPDQSQIMVGDQSGIIH 646
+ + + +DCT RIWD R+ C K+ + V V +P + I+ G I
Sbjct: 96 DSHYTCSASDDCTLRIWDARSP--YECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIR 153
Query: 647 I 649
I
Sbjct: 154 I 154
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 356 AAAGFQHI-RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR 529
A++GF + R++DL +A + F+ K V V F NG + +GGED RIWD R
Sbjct: 146 ASSGFDSLARVWDLRTARN--ILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLR 202
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Frame = +2
Query: 311 DSQVNSLEISPTS--MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWM 484
D VN PT +V+ A + ++L+ ++ V T NVS V F +
Sbjct: 204 DRGVNWASFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDII 263
Query: 485 YTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGII 643
+ ED + R+WD A RT Q + + +HP+ + + G +G+I
Sbjct: 264 VSNSEDKSIRVWD--ATKRTGIQTFRREHDRFWILAVHPEINLLAAGHDNGMI 314
Score = 35.1 bits (77), Expect = 0.041
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Frame = +2
Query: 218 SQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS--MVAAAGFQHIRLYD 391
SQ V+GG D+ IK+W + CL T+ + +++ + +V+A+ Q IR+++
Sbjct: 62 SQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWN 121
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
S V T + V F + + D T R+WD
Sbjct: 122 WQSRTCISVLTGH--NHYVMCASFHPKEDLVVSASLDQTVRVWD 163
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMV-AAAGF 370
D +L S + + +D T+K+W+A C +++ D VN++ +S V +
Sbjct: 196 DAVTALAVSDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNGTVYTGSAD 255
Query: 371 QHIRLY--DLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ IR++ V T E V+ + +G+ +++G D + +W+
Sbjct: 256 RRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWE 308
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSG---VCLRTMQHPDSQVNSLEISPTS--MVAA 361
T+ G ++T D T+++W+ C T+ ++V ++ + PT+ V+A
Sbjct: 268 TSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSA 327
Query: 362 AGFQHIRLYDLSSANPDPVTTFEDISKNV--SRVGFQKNGTWMYTGGEDCTARIWDPRA 532
+ YDLSS + + D SKNV + F +G + TG +IWD ++
Sbjct: 328 SLDGTWCFYDLSSGSC--LAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKS 384
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSG---VCLRTMQHPDSQVNSLEISPTS--MVAA 361
T+ G ++T D T+++W+ C T+ ++V ++ + PT+ V+A
Sbjct: 268 TSVKFVGDSDLVLTASADKTVRIWRNPGDGNYACGYTLNDHSAEVRAVTVHPTNKYFVSA 327
Query: 362 AGFQHIRLYDLSSANPDPVTTFEDISKNV--SRVGFQKNGTWMYTGGEDCTARIWDPRA 532
+ YDLSS + + D SKNV + F +G + TG +IWD ++
Sbjct: 328 SLDGTWCFYDLSSGSC--LAQVSDDSKNVDYTAAAFHPDGLILGTGTSQSVVKIWDVKS 384
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 38.7 bits (86), Expect = 0.003
Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAH--SGV---CLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDL 394
++TG +D TIK W SG + T P+ +VNSL + +V A +H+ +YDL
Sbjct: 112 VITGSWDKTIKCWDPRGASGTERTQIGTYMQPE-RVNSLSLVGNRLVVATAGRHVNIYDL 170
Query: 395 SSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGED--CTARIWDPRAAPRT-----RCQ 553
+ + + V NGT + + +D A + +C
Sbjct: 171 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAAQAKKYAFKCH 230
Query: 554 KIFQ----VQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
+ + + PVNA+ HP G G ++I
Sbjct: 231 RKSEDGRDIVYPVNAIAFHPIYGTFASGGCDGFVNI 266
Score = 37.1 bits (82), Expect = 0.010
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANP 409
L+ +D +++L+ A+ + +H + ++ +S + +R D ++
Sbjct: 31 LLVSSWDKSVRLYDANGDLMRGEFKHGGAVLDCCFHDDSSGFSVCADTKVRRIDFNAGKE 90
Query: 410 DPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP--VN 583
D + T E K V V + + TG D T + WDPR A T +I P VN
Sbjct: 91 DVLGTHE---KPVRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVN 147
Query: 584 AVML 595
++ L
Sbjct: 148 SLSL 151
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 470 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSG 637
N W +G D TAR+WD RAA R + + VN V PD + G G
Sbjct: 216 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDG 270
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 470 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSG 637
N W +G D TAR+WD RAA R + + VN V PD + G G
Sbjct: 154 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDG 208
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 25/56 (44%)
Frame = +2
Query: 470 NGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSG 637
N W +G D TAR+WD RAA R + + VN V PD + G G
Sbjct: 216 NPNWFISGSCDSTARLWDTRAASRA-VRTFHGHEGDVNTVKFFPDGYRFGTGSDDG 270
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +2
Query: 239 GGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYDLSSANPD 412
GG D TIK W H+G CL ++ SQV SL S ++++ GF +L +
Sbjct: 335 GGGDRTIKFWNTHTGACLNSVD-TGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMV 393
Query: 413 PVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRT 544
+ + V + +G + + D T R W+ P T
Sbjct: 394 KMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPET 437
Score = 30.7 bits (66), Expect = 0.87
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 248 DHTIKLWQAHSGVC--LRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVT 421
DHT+ LW A +G L T+ V S+ +P A G + + SA+ +
Sbjct: 159 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLR 218
Query: 422 TFEDISKNVSRVG-FQKNGTWMYTGGED 502
T + + SRVG N + TGG D
Sbjct: 219 TLK--GGHQSRVGSLAWNNHILTTGGMD 244
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +2
Query: 257 IKLWQAHSGVCLRTMQHP-DSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFED 433
++LW + S LRT++ S+V SL + ++ G + + + V T+
Sbjct: 206 VQLWDSASNRQLRTLKGGHQSRVGSLAWN-NHILTTGGMDGLIINNDVRIRSPIVETYRG 264
Query: 434 ISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR-AAPRTRCQKIFQVQAPVNAV 589
++ V + + +G + +GG D IWD A+ + Q + +++ +AV
Sbjct: 265 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAV 317
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Frame = +2
Query: 239 GGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYDLSSANPD 412
GG D TIK W H+G CL ++ SQV SL S ++++ GF +L +
Sbjct: 325 GGGDRTIKFWNTHTGACLNSVD-TGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMV 383
Query: 413 PVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRT 544
+ + V + +G + + D T R W+ P T
Sbjct: 384 KMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWNVFGVPET 427
Score = 30.7 bits (66), Expect = 0.87
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 248 DHTIKLWQAHSGVC--LRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVT 421
DHT+ LW A +G L T+ V S+ +P A G + + SA+ +
Sbjct: 149 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLR 208
Query: 422 TFEDISKNVSRVG-FQKNGTWMYTGGED 502
T + + SRVG N + TGG D
Sbjct: 209 TLK--GGHQSRVGSLAWNNHILTTGGMD 234
Score = 29.9 bits (64), Expect = 1.5
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Frame = +2
Query: 257 IKLWQAHSGVCLRTMQHP-DSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFED 433
++LW + S LRT++ S+V SL + ++ G + + + V T+
Sbjct: 196 VQLWDSASNRQLRTLKGGHQSRVGSLAWN-NHILTTGGMDGLIINNDVRIRSPIVETYRG 254
Query: 434 ISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR-AAPRTRCQKIFQVQAPVNAV 589
++ V + + +G + +GG D IWD A+ + Q + +++ +AV
Sbjct: 255 HTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAV 307
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
GG + L+TG DHT K+W + C++T++ V+++ P + G
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITG 247
Score = 31.5 bits (68), Expect = 0.50
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSLEI----SPTSMVAAAGFQHIRLYDLSSANPDP 415
D TIK+W S T+ VN ++ ++ + +++D + +
Sbjct: 164 DRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V T E + NVS V F + TG ED T RIW
Sbjct: 222 VQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 37.5 bits (83), Expect = 0.008
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Frame = +2
Query: 206 SLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRL 385
SL Q L + +D T+K+W+ H C+ +++ D VNS+ + + + + +++
Sbjct: 142 SLAEDQGLLYSASWDRTVKVWRIHDLKCIESIKAHDDAVNSVTTAESLVFTGSADGTVKV 201
Query: 386 YDLSSANPDPV-TTFEDISKNVSRV-GFQKNGTWMYTGGEDCTARIWD 523
+ + F+ + K S V + +Y+G D W+
Sbjct: 202 WKREIRGKRTAHSLFQTLLKQESAVTALVTSHMAVYSGSSDGAVNFWE 249
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 179 HKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 343
H+M GD S L++G D TI++W SG + M H + V + +SP
Sbjct: 537 HRMFGDANGC--NSSHVLISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILSP 589
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 36.3 bits (80), Expect = 0.018
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 3/140 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH-IRLYDLSSAN 406
+++ GY +K+W S V + ++A IRLYD+ +
Sbjct: 489 MISAGYHGDLKVWDFKKRELKSQWDVGCSLVKIVYHRVNGLLATVADDFVIRLYDVVTLK 548
Query: 407 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNA 586
V F + ++ + F ++G W+ + D + RIWD A + V P+ A
Sbjct: 549 M--VREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQI---DGVHVDVPITA 603
Query: 587 VMLHPDQSQIMV--GDQSGI 640
+ L P+ + DQ+G+
Sbjct: 604 LSLSPNMDVLATAHSDQNGV 623
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 36.3 bits (80), Expect = 0.018
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +2
Query: 308 PDSQVNSLEISPTS--MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTW 481
P ++N++ + P S + AAG +D+ S TF+ S + V + + +
Sbjct: 158 PMPEINAMSVDPQSGSVFTAAGDSCAYCWDVESGKIK--MTFKGHSDYLHTVVSRSSASQ 215
Query: 482 MYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
+ TG ED TARIWD + +C K+ Q
Sbjct: 216 ILTGSEDGTARIWDCKTG---KCVKVIGSQ 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 35/146 (23%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDS----QVNSLEI--SPTSMVAAAGFQHIRLYD 391
++TG D T ++W +G C++ + D +V+S+ + S + +V G +++ L++
Sbjct: 216 ILTGSEDGTARIWDCKTGKCVKVIGSQDKKSRLRVSSMALDGSESWLVCGQG-KNLALWN 274
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQ 571
L ++ + V T I +V V F + + T G + R +D A +I
Sbjct: 275 LPAS--ECVQTI-PIPAHVQDVMFDEK--QILTVGAEPLLRRFDLNGA---LLSQIHCAP 326
Query: 572 APVNAVMLHPDQSQIMVGDQSGIIHI 649
V ++ LHP + VG GI+ +
Sbjct: 327 CSVFSISLHP-AGVVAVGGYGGIVDV 351
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTM-QHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSAN 406
+VTG D +K+W G C +++ H DS + + T + + G + Y +
Sbjct: 597 IVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLFSIGKDRLVKY-WDADK 655
Query: 407 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAP 538
+ + T E + + G ++ TG D + R WD P
Sbjct: 656 FEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSEEP 699
Score = 32.3 bits (70), Expect = 0.29
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Frame = +2
Query: 257 IKLWQAHSGVCLRTMQ------HPDSQVNSLEISPTSMVAAA-GFQHIRLYDLSSANPDP 415
+ +W GVC +T+ P V S+ S +S+VA IR++D +
Sbjct: 41 VGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCE- 99
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
F V+ + + K G+ + +G +D +WD
Sbjct: 100 -VNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWD 134
Score = 32.3 bits (70), Expect = 0.29
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Frame = +2
Query: 206 SLGGSQVALVTGGY-DHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIR 382
S+ S +LV GY D +I++W G C V +L + + A+G +
Sbjct: 70 SIASSASSLVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDND 129
Query: 383 LYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ + V+ + F G + + +D R+WD
Sbjct: 130 IILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWD 176
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
GG + L+TG DHT K+W + C++T++ V+++ P + G
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITG 247
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSLEI----SPTSMVAAAGFQHIRLYDLSSANPDP 415
D TIK+W S T+ VN ++ ++ + +++D + +
Sbjct: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V T E + NVS V F + TG ED T RIW
Sbjct: 222 VQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSM--VAAAGFQ-HIRLYDLSS 400
L++ D T++LW+ CL H ++ V +E +P + A+ R++ LS
Sbjct: 286 LLSASKDKTVRLWRTGCDQCLHVFHH-NNYVTCVEFNPVNKNNFASGSIDGKARIWGLSE 344
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTG 493
+ V + D+ ++S + +Q NG G
Sbjct: 345 ---ERVVAWTDVRDSISAISYQPNGNGFVVG 372
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 35.9 bits (79), Expect = 0.023
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
+V+ +D T+K+W + T+ +N++ +SP + A+G + I L+DL A
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWDL--A 223
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ + E + + F N W+ E+ + RIWD
Sbjct: 224 EGKKLYSLE-AGSIIHSLCFSPNRYWLCAATEN-SIRIWD 261
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 35.9 bits (79), Expect = 0.023
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = +2
Query: 326 SLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFED--ISK-NVSRVGFQKNGTWMYTGG 496
S+ S S+ A G +R++DL P + D I K ++ + + +G + G
Sbjct: 24 SVHPSQKSVAVAVG-SDLRIFDLIENCPVSLVDESDGPIRKESIRAIRYSTSGKLFVSAG 82
Query: 497 EDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
+D +IW +A RC + V+AV + D S + D+ G++ +
Sbjct: 83 DDKLVKIW---SADSWRCLNTVCSEKRVSAVAISSDDSHVCYADKFGVVWV 130
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 35.5 bits (78), Expect = 0.031
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Frame = +2
Query: 236 TGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSAN--- 406
TG D+TIK W G L TM S V++L + + + + +RL+ LS +
Sbjct: 602 TGSGDNTIKAWSLQDGSLLCTMSGHKSVVSTLVVVNGVLYSGSWDGTVRLWSLSDNSLLT 661
Query: 407 ------PDPVTTFEDISK-----NVSRVGFQKNGTWMYTGGEDCTARI 517
P + + + K N + + NG W++TGG D T +
Sbjct: 662 VLGEETPGIIWRDDTLMKSMKIQNGAILSIAVNGKWLFTGGWDKTINV 709
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 35.1 bits (77), Expect = 0.041
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Frame = +2
Query: 230 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGFQHIRLYDLS 397
L TGG D IK W H+G CL +++ SQV SL S ++++ GF +L
Sbjct: 316 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSLLWSQSERELLSSHGFTQNQLTLWK 374
Query: 398 SANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAP 577
+ + + V + NG + + D R+W+ P +K + P
Sbjct: 375 YPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGEPPKTTKKAASKKYP 434
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
GG + L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSLEI----SPTSMVAAAGFQHIRLYDLSSANPDP 415
D TIK+W S T+ VN ++ ++ + +++D + +
Sbjct: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V T + + NVS V F + TG ED T RIW
Sbjct: 222 VQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
GG + L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSLEI----SPTSMVAAAGFQHIRLYDLSSANPDP 415
D TIK+W S T+ VN ++ ++ + +++D + +
Sbjct: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V T + + NVS V F + TG ED T RIW
Sbjct: 222 VQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
GG + L+TG DHT K+W + C++T+ V+++ P + G
Sbjct: 196 GGDKPYLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITG 247
Score = 30.7 bits (66), Expect = 0.87
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSLEI----SPTSMVAAAGFQHIRLYDLSSANPDP 415
D TIK+W S T+ VN ++ ++ + +++D + +
Sbjct: 164 DRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSC-- 221
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V T + + NVS V F + TG ED T RIW
Sbjct: 222 VQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIW 256
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 34.7 bits (76), Expect = 0.054
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Frame = +2
Query: 230 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS--PTSMVAAAGFQHIRLYDLS 397
L TGG D IK W H+G CL +++ SQV SL S ++++ GF +L
Sbjct: 314 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSLLWSQRERELLSSHGFTQNQLTLWK 372
Query: 398 SANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD-----PRAAPRTRCQKIF 562
+ + + V + NG + + D R+W+ P+ + +
Sbjct: 373 YPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGEPPKTTKKAASKNYL 432
Query: 563 QVQAPVNAV--MLHPDQSQIMVGDQSGIIH 646
++ + VN++ L S I V +S IIH
Sbjct: 433 ELFSHVNSLRWCLVSFASGIDVLGKSNIIH 462
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 34.7 bits (76), Expect = 0.054
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVN--SLEISPTSMVAAAGFQHIR--LYDLS 397
+VT G D +KLW G +RT + + N L + + G ++ R +YD
Sbjct: 127 VVTAGTDGCLKLWSVEDGRVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRR 186
Query: 398 SANPDPVTTFEDISKNV-SRVGFQKNGTWMYTGGEDCT 508
P V FE + N S F + W +G + CT
Sbjct: 187 WGKPVWVDGFEPVGMNSGSDKRFVSSVCWRQSGVDQCT 224
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 29.5 bits (63), Expect(2) = 0.083
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 461 FQKNGTWMYTGGEDCTARIWD 523
FQ+ G ++ +GG D T +IWD
Sbjct: 285 FQEKGRFLISGGNDKTVKIWD 305
Score = 23.4 bits (48), Expect(2) = 0.083
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQH-PDSQVNSLEISPTSMVAAAGFQHIRLYD----- 391
++TGG D + LW G + + D+ NS + + V + + + D
Sbjct: 164 VITGGLDSKLVLWDFSKGRSQKIIDFGSDTNNNSGQCLNPAFVHSIAIPEMDMVDKLDKI 223
Query: 392 LSSANPDPVTTFEDISKNVSRVGFQKNGT 478
+ A D + +I +SR G G+
Sbjct: 224 CAVARGDGIVNLINIESELSRKGTSSKGS 252
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 221 QVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
Q+ L + +D T+KLW A G L + V SL SP A+G
Sbjct: 511 QLTLASASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASG 559
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +2
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 595
+ TF D ++ ++ + F T + + +D + +D R K+FQ V ++
Sbjct: 77 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 136
Query: 596 HPDQSQIMVGDQSGIIHI 649
HP ++ G I H+
Sbjct: 137 HPSGEFLLAGTDHPIPHL 154
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Frame = +2
Query: 242 GYDHTIK-LWQAHSGVCLRTMQHPDSQV----NSLEISPTSMV--AAAGFQHIRLYDLSS 400
G DH I L+ ++ C PDS V N + S T + A+ IRL+D S
Sbjct: 146 GTDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVS 205
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
A V+ F K+ ++ + G+D T ++W+
Sbjct: 206 AKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWE 246
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/78 (21%), Positives = 34/78 (43%)
Frame = +2
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVML 595
+ TF D ++ ++ + F T + + +D + +D R K+FQ V ++
Sbjct: 169 IRTFYDHAEPINDLDFHPRSTILISSAKDNCIKFFDFSKTTAKRAFKVFQDTHNVRSISF 228
Query: 596 HPDQSQIMVGDQSGIIHI 649
HP ++ G I H+
Sbjct: 229 HPSGEFLLAGTDHPIPHL 246
Score = 29.9 bits (64), Expect = 1.5
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Frame = +2
Query: 242 GYDHTIK-LWQAHSGVCLRTMQHPDSQV----NSLEISPTSMV--AAAGFQHIRLYDLSS 400
G DH I L+ ++ C PDS V N + S T + A+ IRL+D S
Sbjct: 238 GTDHPIPHLYDVNTYQCFLPSNFPDSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVS 297
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
A V+ F K+ ++ + G+D T ++W+
Sbjct: 298 AKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLWE 338
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 33.9 bits (74), Expect = 0.094
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Frame = +2
Query: 230 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGFQHIRLYDLS 397
L TGG D IK W H+G CL +++ SQV SL S ++++ GF L+
Sbjct: 283 LATGGGVGDGKIKFWNTHTGACLNSVE-TGSQVCSLLWSKSERELLSSHGFTQ---NQLT 338
Query: 398 SANPDPVTTFEDISKNVSRVGF---QKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 556
+ +++ + SRV F +G + + D T R+W+ P +K
Sbjct: 339 LWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKK 394
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +2
Query: 242 GYDHT-IKLWQAHSGVCLRTMQHP-DSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDP 415
G D++ ++LW S +RT++ +S+V SL + ++ G + +
Sbjct: 152 GLDNSEVQLWDCVSNRQVRTLRGGHESRVGSLAWN-NHILTTGGMDGKIVNNDVRIRSSI 210
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA 532
V T+ ++ V + + ++G + +GG D IWD R+
Sbjct: 211 VETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWDHRS 249
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 33.9 bits (74), Expect = 0.094
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
+V+ +D T+K+W + ++ +N++ +SP + A+G + I L+DL A
Sbjct: 166 IVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDL--A 223
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ + E + + F N W+ E+ + RIWD
Sbjct: 224 EGKKLYSLE-AGSIIHSLCFSPNRYWLCAATEN-SIRIWD 261
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQ---AHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSS 400
+ +GG + +W A S V + DS N TS+ +I + S
Sbjct: 142 VASGGLGGEVFIWDIEAALSPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPS 201
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRT 544
P T + ++V + GT + +GG + R+WDPR ++
Sbjct: 202 HGYTP-TIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKS 248
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQ-HPDSQVNSLEISPT-SMVAAAG-FQHIRLYDLSSA 403
++G D I+LW CL T H DS V +L +P+ S V + G Q + L DL++
Sbjct: 271 LSGSSDSMIRLWDLGQQRCLHTYAVHTDS-VWALACNPSFSHVYSGGRDQCLYLTDLATR 329
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA-APRTRCQK 556
+ T E + ++ Q N W+ T D + W +P+T Q+
Sbjct: 330 ESVLLCTKE---HPIQQLALQDNSIWVAT--TDSSVERWPAEVQSPKTVFQR 376
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSG-VCLRTMQHPDS-QVNSLEISPTSMVAAAGFQHIRLYDLSSA 403
LV+GG + +++W +G ++ H D+ +V L+ + ++ + IRL+DL
Sbjct: 228 LVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQ 287
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGED 502
+ T+ + +V + + + +Y+GG D
Sbjct: 288 R--CLHTYAVHTDSVWALACNPSFSHVYSGGRD 318
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 3/108 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQ---AHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSS 400
+ +GG + +W A S V + DS N TS+ +I + S
Sbjct: 142 VASGGLGGEVFIWDIEAALSPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPS 201
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRT 544
P T + ++V + GT + +GG + R+WDPR ++
Sbjct: 202 HGYTP-TIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSKS 248
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHSGVCLRTMQ-HPDSQVNSLEISPT-SMVAAAG-FQHIRLYDLSSA 403
++G D I+LW CL T H DS V +L +P+ S V + G Q + L DL++
Sbjct: 271 LSGSSDSMIRLWDLGQQRCLHTYAVHTDS-VWALACNPSFSHVYSGGRDQCLYLTDLATR 329
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA-APRTRCQK 556
+ T E + ++ Q N W+ T D + W +P+T Q+
Sbjct: 330 ESVLLCTKE---HPIQQLALQDNSIWVAT--TDSSVERWPAEVQSPKTVFQR 376
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSG-VCLRTMQHPDS-QVNSLEISPTSMVAAAGFQHIRLYDLSSA 403
LV+GG + +++W +G ++ H D+ +V L+ + ++ + IRL+DL
Sbjct: 228 LVSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQ 287
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGED 502
+ T+ + +V + + + +Y+GG D
Sbjct: 288 R--CLHTYAVHTDSVWALACNPSFSHVYSGGRD 318
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLSS 400
L++ D T++LW + CL+ H D V ++ +P ++ + IR++++S+
Sbjct: 533 LLSSSMDKTVRLWDIETQSCLKLFAHND-YVTCVQFNPLDEDYFISGSLDAKIRIWNISN 591
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
V + D+ + V+ V + +G + G + R++
Sbjct: 592 RQ---VVEWNDLKEMVTAVCYTPDGQAAFVGSINGHCRLY 628
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 33.5 bits (73), Expect = 0.12
Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQ 373
D+ + L + +G +D T+K+W+ CL +++ D +N L + +A+
Sbjct: 175 DSISCLAVHAGIIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVAGDGRVYSASADG 234
Query: 374 HIRLY--------DLSSANPDPV----TTFEDISK-NVSRVGFQKNGTWMYTGGEDCTAR 514
++++ + +S++ + T E ++ +V+ V +G W+Y GG D
Sbjct: 235 KVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNSVVVSGDGNWVYGGGSDGFVI 294
Query: 515 IWDPR 529
W+ +
Sbjct: 295 GWEKK 299
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 33.5 bits (73), Expect = 0.12
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 12/110 (10%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQH--PDSQV-----NSLEISPTS-MVAAAGFQHIR- 382
L+TG D T KLW SG L T + P V + L + T V + H++
Sbjct: 94 LITGSADQTAKLWDVKSGKELFTFKFGAPARSVDFSVGDHLAVITTDHFVGTSSAIHVKR 153
Query: 383 -LYDLSSANPDPVTTFE--DISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
D D V + D K ++R + + +GGED RIWD
Sbjct: 154 IAEDPEDQVGDSVLVLQSPDGKKKINRAVWGPLNQTIVSGGEDAAIRIWD 203
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH 376
+V+GG D I++W A +G + ++ D +V E + TS+ AA H
Sbjct: 190 IVSGGEDAAIRIWDAETG---KLLKQSDEEVGHKE-AITSLCKAADDSH 234
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +2
Query: 290 LRTMQHPDSQVNSLEISPT---SMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVG 460
+R+ Q +V S++ +PT S + ++ ++L+ + P V TF++ + V +
Sbjct: 99 IRSFQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAMD--RPASVRTFKEHAYCVYQAV 156
Query: 461 FQ-KNGTWMYTGGEDCTARIWDPR 529
+ K+G + DCT RIWD R
Sbjct: 157 WNPKHGDVFASASGDCTLRIWDVR 180
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Frame = +2
Query: 227 ALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLS 397
+ +T +D T+KLW +RT + V +P +A+G +R++D+
Sbjct: 121 SFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVR 180
Query: 398 SANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPRA 532
+ D + +S + + + T D T ++WD R+
Sbjct: 181 EPGSTMIIPAHDF-EILSCDWNKYDDCILATSSVDKTVKVWDVRS 224
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 33.1 bits (72), Expect = 0.16
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Frame = +2
Query: 230 LVTGGY--DHTIKLWQAHSGVCLRTMQHPDSQVNSL--EISPTSMVAAAGFQHIRLYDLS 397
L TGG D I W H+G CL +++ SQV SL S +++A GF L+
Sbjct: 300 LATGGGVGDGKINFWNTHTGACLNSVE-TGSQVCSLLWSKSERELLSAHGFTQ---NQLT 355
Query: 398 SANPDPVTTFEDISKNVSRVGF---QKNGTWMYTGGEDCTARIWDPRAAPRTRCQK 556
+ +++ + SRV F +G + + D T R+W+ P +K
Sbjct: 356 LWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKK 411
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 33.1 bits (72), Expect = 0.16
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Frame = +2
Query: 233 VTGGYDHTIKLWQAHS-GVCLR---TMQ-HPDSQ---VNSLEISPTS--MVAAAGF-QHI 379
+ GY+ +I+++ H G R T+Q + + Q +++L SPT+ M+A + Q
Sbjct: 178 IFAGYNSSIRVFDLHRPGRDFRQYSTLQKNKEGQAGILSTLAFSPTNSGMLAVGSYGQTT 237
Query: 380 RLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGG-EDCTARIWDPRAAPRTRCQK 556
+Y N + + V+ V F K+G ++YTGG +D WD R + K
Sbjct: 238 GIY--REDNMELLYVLHGQEGGVTHVQFSKDGNYLYTGGRKDPYILCWDIRKSVEI-VYK 294
Query: 557 IFQVQAPVNAVM---LHPDQSQIMVGDQSGIIHI 649
+++ N + + P + G Q G++H+
Sbjct: 295 LYRATENTNQRVFFDIEPCGRHLGTGGQDGLVHM 328
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 188 AGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
+G+ T G Q+ L +G D TIK+W ++ C+ T++ V SL
Sbjct: 258 SGEVTCFAVGGQM-LYSGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSL 304
Score = 27.1 bits (57), Expect(2) = 0.24
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 317 QVNSLEISPTSMVAAAGFQHIRLYDLSS-ANPDPVTTFEDISKNVSRVG-FQKNGTWMYT 490
QVN++ I+ + A I ++ ++ + DP + + V F G +Y+
Sbjct: 214 QVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLYS 273
Query: 491 GGEDCTARIWD 523
G D T ++WD
Sbjct: 274 GSVDKTIKMWD 284
Score = 24.2 bits (50), Expect(2) = 0.24
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 248 DHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D T+++W +SG C+ ++ + D++ SL
Sbjct: 152 DGTLRVWDCNSGQCVHSI-NLDAEAGSL 178
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 32.7 bits (71), Expect = 0.22
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS--MVAAAGFQHIRLYDLSSA 403
LV+GG D +KLW SG L ++ + V S++ + ++ A+ Q I+LYD+ +
Sbjct: 283 LVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTM 342
Query: 404 NPDPVTTFEDISKNVSRVGFQK-NGTWMYTGGEDCTARIW 520
+ +F +K+V+ + + + + +G D + W
Sbjct: 343 K--ELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHW 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Frame = +2
Query: 320 VNSLEISPTSMVAAAGF--QHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTG 493
V S++ PT + +G Q ++L+D S + + V V + +NG W+ T
Sbjct: 271 VKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRE--LCSLHGHKNIVLSVKWNQNGNWLLTA 328
Query: 494 GEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQS 634
+D +++D R Q V ++ HP + V S
Sbjct: 329 SKDQIIKLYDIRT--MKELQSFRGHTKDVTSLAWHPCHEEYFVSGSS 373
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D + S Q+ ++T G D TIK+W A +GV T + ++ V S+
Sbjct: 467 DISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D + S Q+ ++T G D TIK+W A +GV T + ++ V S+
Sbjct: 467 DISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSV 512
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 32.3 bits (70), Expect = 0.29
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQ-HPDS-----QVNSLEISPTSMVAAAGFQ 373
G S ++TG YD ++W + +G C ++ H + VNS + ++ A+ +
Sbjct: 118 GSSPRFILTGCYDGLGRVWSS-AGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDR 176
Query: 374 HIRLYDLSSANPDPVTTFEDISK-------NVSRVGFQKNGTWMYTGGEDCTARIWD 523
+RL+ A TT K +V V QK+G + + DCT +W+
Sbjct: 177 TLRLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWN 233
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 320 VNSLEISPTSMVAAAGFQH-IRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGG 496
V+S+ ++ ++ + H +R +D+ + D + F + N VG + + + GG
Sbjct: 275 VSSVVWPEHDVIYSSSWDHSVRRWDVETGK-DSLNLFCGKALNTVDVGGESSAL-IAAGG 332
Query: 497 EDCTARIWDPR 529
D R+WDPR
Sbjct: 333 SDPILRVWDPR 343
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 32.3 bits (70), Expect = 0.29
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Frame = +2
Query: 212 GGSQVALVTGGYDHTIKLWQAHSGVCLRTMQ-HPDS-----QVNSLEISPTSMVAAAGFQ 373
G S ++TG YD ++W + +G C ++ H + VNS + ++ A+ +
Sbjct: 118 GSSPRFILTGCYDGLGRVWSS-AGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDR 176
Query: 374 HIRLYDLSSANPDPVTTFEDISK-------NVSRVGFQKNGTWMYTGGEDCTARIWD 523
+RL+ A TT K +V V QK+G + + DCT +W+
Sbjct: 177 TLRLFKFDPAESVDSTTKVRAYKILRGHKASVQSVSAQKSGNMVCSSSWDCTINLWN 233
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 320 VNSLEISPTSMVAAAGFQH-IRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGG 496
V+S+ ++ ++ + H +R +D+ + D + F + N VG + + + GG
Sbjct: 275 VSSVVWPEHDVIYSSSWDHSVRRWDVETGK-DSLNLFCGKALNTVDVGGESSAL-IAAGG 332
Query: 497 EDCTARIWDPR 529
D R+WDPR
Sbjct: 333 SDPILRVWDPR 343
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 32.3 bits (70), Expect = 0.29
Identities = 27/136 (19%), Positives = 55/136 (40%), Gaps = 5/136 (3%)
Frame = +2
Query: 131 NVLLRNKYANCLNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHP 310
N RN+ + L F + + +L + L +G +D T K+W+ C+ ++
Sbjct: 195 NFTRRNRSSAALG--FRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESVNAH 252
Query: 311 DSQVNSLEISPTSMVAAAGFQH-IRLYDLSSANPDPVTTF-EDISKN---VSRVGFQKNG 475
+ VN++ +V ++++ D F E + K V+ + ++
Sbjct: 253 EDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAKDTKHFFSETLLKQDCAVTAIAVDQSA 312
Query: 476 TWMYTGGEDCTARIWD 523
T +Y G D T W+
Sbjct: 313 TLVYCGSSDGTVNFWE 328
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 32.3 bits (70), Expect = 0.29
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Frame = +2
Query: 230 LVTGGYDHTIKLW--QAHSG---VCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDL 394
++TG +D T+K W + SG + T P+ +V S+ + +V A +H+ +YDL
Sbjct: 113 VITGSWDKTVKCWDPRGASGPERTQVGTYLQPE-RVYSMSLVGHRLVVATAGRHVNIYDL 171
Query: 395 SSANPDPVTTFEDISKNVSRVGFQKNGT-WMYTGGEDCTA-RIWDPRAAPRT-----RCQ 553
+ + + V NGT + + E A +D A + +C
Sbjct: 172 RNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCH 231
Query: 554 KIFQ----VQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
+ + + PVN++ HP G G ++I
Sbjct: 232 RKSEAGRDIVYPVNSIAFHPIYGTFATGGCDGFVNI 267
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 32.3 bits (70), Expect = 0.29
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L +G +D T+K+W+ CL ++Q D +N++
Sbjct: 264 LYSGSWDKTLKVWRLSDSKCLESIQAHDDAINTV 297
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/107 (23%), Positives = 44/107 (41%)
Frame = +2
Query: 260 KLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDIS 439
K W GV ++ D + ++ + V Q +LSS D + D S
Sbjct: 164 KSWLKKLGVLTHVLESMDCESVRTQLHQVARVQTHKKQ---FKELSSMCIDQEFSAHDGS 220
Query: 440 KNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPV 580
+ + F +G ++ + GEDC R+W RT ++ +V + V
Sbjct: 221 --ILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVDSGV 265
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLSS 400
L++ D T++LW+ CLRT H ++ V + +P ++ + +R++D++
Sbjct: 336 LLSSSVDETVRLWRVGCDECLRTFTH-NNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTR 394
Query: 401 ANPDPVTTFEDI 436
T DI
Sbjct: 395 CRVVDYTDIRDI 406
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/107 (23%), Positives = 44/107 (41%)
Frame = +2
Query: 260 KLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDIS 439
K W GV ++ D + ++ + V Q +LSS D + D S
Sbjct: 164 KSWLKKLGVLTHVLESMDCESVRTQLHQVARVQTHKKQ---FKELSSMCIDQEFSAHDGS 220
Query: 440 KNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPV 580
+ + F +G ++ + GEDC R+W RT ++ +V + V
Sbjct: 221 --ILAMKFSPDGKYIASAGEDCVVRVWSITEEERTDTYEVAEVDSGV 265
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLSS 400
L++ D T++LW+ CLRT H ++ V + +P ++ + +R++D++
Sbjct: 336 LLSSSVDETVRLWRVGCDECLRTFTH-NNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTR 394
Query: 401 ANPDPVTTFEDI 436
T DI
Sbjct: 395 CRVVDYTDIRDI 406
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 407 PDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
PDPV +V V F + + ++TG D RIWD
Sbjct: 7 PDPVAVLRGHRHSVMDVSFHPSKSLLFTGSADGELRIWD 45
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D S Q+ +VT G D TIK+W A +G L T + ++ V S+
Sbjct: 469 DLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSV 514
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D S Q+ +VT G D TIK+W A +G L T + ++ V S+
Sbjct: 469 DLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSV 514
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLSS 400
L++ D T++LW + CL+ H D V ++ SP ++ + IR++ +
Sbjct: 520 LLSSSMDKTVRLWDIETKTCLKLFAHND-YVTCIQFSPVDENYFLSGSLDAKIRIWSIQD 578
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+ V + D+ + V+ + +G G R +D
Sbjct: 579 RH---VVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYD 616
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH-IRLYDLS 397
L T +D TIK+W A G LRT+ + V S++ P T ++ + + IR +D++
Sbjct: 565 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDIN 624
Query: 398 SA 403
++
Sbjct: 625 AS 626
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q I L++
Sbjct: 689 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWN 744
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH-IRLYDLS 397
L T +D TIK+W A G LRT+ + V S++ P T ++ + + IR +D++
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDIN 626
Query: 398 SA 403
++
Sbjct: 627 AS 628
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q I L++
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWN 746
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH-IRLYDLS 397
L T +D TIK+W A G LRT+ + V S++ P T ++ + + IR +D++
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDIN 626
Query: 398 SA 403
++
Sbjct: 627 AS 628
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q I L++
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWN 746
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH-IRLYDLS 397
L T +D TIK+W A G LRT+ + V S++ P T ++ + + IR +D++
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDIN 626
Query: 398 SA 403
++
Sbjct: 627 AS 628
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q I L++
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWN 746
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHS-GVCLRTMQHPDSQVNSLEISP--TSMVAAAGFQH-IRLYDLS 397
L T +D TIK+W A G LRT+ + V S++ P T ++ + + IR +D++
Sbjct: 567 LATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDIN 626
Query: 398 SA 403
++
Sbjct: 627 AS 628
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
LV + +KLW SG C+ + + ++ +S+ P+ ++ G+Q I L++
Sbjct: 691 LVASVSEDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWN 746
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 31.9 bits (69), Expect = 0.38
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = +2
Query: 221 QVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDL 394
Q +V+ +D T+K+W + T+ V+++ +SP + A+G + + L+DL
Sbjct: 164 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 223
Query: 395 SSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
A + + E + + + F N W+ E +IWD
Sbjct: 224 --AEGKKLYSLE-ANSVIHALCFSPNRYWLCAATEH-GIKIWD 262
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRT 298
+ +G DH ++LW A +G C+RT
Sbjct: 161 VASGSLDHEVRLWNAKTGECIRT 183
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 31.9 bits (69), Expect = 0.38
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRT 298
+ +G DH ++LW A +G C+RT
Sbjct: 161 VASGSLDHEVRLWNAKTGECIRT 183
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 455 VGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQV-QAPVNAVMLHPDQSQIMVGDQ 631
V F +G ++ T DCTA IW + + + Q PV+ V PD ++++
Sbjct: 230 VQFSNSGKYLATASSDCTAIIWKVLDDNKVELKHTLESHQNPVSFVSWSPDDTKLLTCGN 289
Query: 632 SGIIHI 649
+ ++ +
Sbjct: 290 AEVLKL 295
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 31.5 bits (68), Expect = 0.50
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L +G +D T+K+W+ CL +++ D VN++
Sbjct: 260 LYSGSWDKTLKVWRLSDSKCLESIEAHDDAVNTV 293
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 31.1 bits (67), Expect = 0.66
Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTS---MVAAAGFQHIRLYDLSS 400
L++ D T++LW S CL+ H D V ++ +P ++ + +R++ +
Sbjct: 527 LLSSSMDKTVRLWNLSSQTCLKVFSHSD-YVTCIQFNPVDDRYFISGSLDAKVRVWSI-- 583
Query: 401 ANPD-PVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIW 520
PD V + D+ + V+ + +G + G + R++
Sbjct: 584 --PDRQVVDWYDLHEMVTSACYTPDGQGVLVGSYKGSCRMY 622
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISP 343
L++ D T++LW S CL+ H D V ++ +P
Sbjct: 482 LLSSSMDKTVRLWDLSSKTCLKVFSHSD-YVTCIQFNP 518
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 188 AGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
+G+ T + G +V L +G D TIK+W ++ C T++ V SL
Sbjct: 312 SGEVTCFVVGGEV-LYSGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSL 358
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 137 LLRNKYANCLNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRT 298
L+ + A L F A T +L LVTG D T+ LW+ H RT
Sbjct: 2652 LVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLWRIHKAFTSRT 2705
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 446 VSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHP 601
V+ + +G W+ +G D + R+W+ RC K++Q + V +P
Sbjct: 426 VTSISTDSSGEWIASGSTDGSVRMWEVETG---RCLKVWQFDEAIMCVAWNP 474
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +2
Query: 197 TTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDS 316
T+ S S + +G D ++++W+ +G CL+ Q ++
Sbjct: 427 TSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFDEA 466
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D S Q+ + T G D TIK+W A +GV T + ++ V S+
Sbjct: 467 DIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSI 512
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 194 DTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
D S Q+ + T G D TIK+W A +GV T + ++ V S+
Sbjct: 467 DIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSI 512
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 425 FEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
++ K V V + NGT + +G D TARIW+
Sbjct: 16 YQGHKKKVHSVAWNSNGTKLASGSVDQTARIWN 48
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
+ +G D +K+W +G C TM+H + +V+++
Sbjct: 230 VASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAV 263
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANP 409
L TG +D T+K W + T Q PD + +L + MV +++ +++L
Sbjct: 129 LATGSWDKTLKYWDTRQQNPVHTQQLPD-KCYTLSVKHPLMVVGTADRNLIVFNLQ---- 183
Query: 410 DPVTTFEDI 436
+P T F+ I
Sbjct: 184 NPQTEFKRI 192
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = +2
Query: 182 KMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPD----SQVNSLEISPTS 349
K D S GS+ +T GYD IK W +G + T ++N +
Sbjct: 327 KAVRDICFSNDGSK--FLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNI 384
Query: 350 MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
++A + I +D+++ + ++ V+ + F N T +D + R+W+
Sbjct: 385 LLAGMSDKKIVQWDINTG--EVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 440
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 416 VTTFEDISKNVSRVGF-QKNGTWMYTGGEDCTARIWD 523
V T+ +K VS + F K G + + G DC +IWD
Sbjct: 275 VHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWD 311
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 167 NNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHS 280
N+K H M +S ++ TG YD T+++W S
Sbjct: 205 NSKVHTMGVCCISSNPSDPYSIFTGSYDETLRVWDTRS 242
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 338 SPTSMVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNG-TWMYTGGEDCTAR 514
S TS+V + + +N + V ++ + F N +YTG +DC
Sbjct: 130 SSTSIVVGLSDGSASVVSFTDSNLETVQEWKGHDFELWTASFDLNNPNLVYTGSDDCKFS 189
Query: 515 IWDPRAAPRTRCQKIFQ 565
WD R +P ++FQ
Sbjct: 190 CWDIRDSPAD--NRVFQ 204
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 482 MYTGGEDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMV 622
++TG D T R+WD R+ R + + V + HP S +++
Sbjct: 226 IFTGSYDETLRVWDTRSVSRPLNETSVSLGGGVWRIKHHPSLSGVVL 272
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +2
Query: 320 VNSLEISPTS-MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGG 496
VN +SP +VA G L + ++N + T + + NG TG
Sbjct: 280 VNHSSLSPDGKLVAVVGDDPDGLL-VDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGN 338
Query: 497 EDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
+D T RIWD R + + A V ++ D + + + + +HI
Sbjct: 339 QDKTCRIWDTRKLSESVAVLKGNLGA-VRSIRFTSDGRYVAMAEPADFVHI 388
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 29.9 bits (64), Expect = 1.5
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +2
Query: 320 VNSLEISPTS-MVAAAGFQHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGG 496
VN +SP +VA G L + ++N + T + + NG TG
Sbjct: 274 VNHSSLSPDGKLVAVVGDDPDGLL-VDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGN 332
Query: 497 EDCTARIWDPRAAPRTRCQKIFQVQAPVNAVMLHPDQSQIMVGDQSGIIHI 649
+D T RIWD R + + A V ++ D + + + + +HI
Sbjct: 333 QDKTCRIWDTRKLSESVAVLKGNLGA-VRSIRFTSDGRYVAMAEPADFVHI 382
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQ----AHSGV----CLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRL 385
LVT D+T+KLW H G+ C T ++ N + +S + A G + +
Sbjct: 896 LVTASTDNTLKLWDLKKTTHGGLSTNACSLTFGGHTNEKNFVGLSTSDGYIACGSETNEV 955
Query: 386 YDLSSANPDPVTTFE 430
Y + P P+T+++
Sbjct: 956 YAYHRSLPMPITSYK 970
Score = 27.5 bits (58), Expect = 8.1
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS---PTSMVAAAGFQHIRLYDLSS 400
L + YD +KLW +G + + + S++ S PT + + + ++L++++
Sbjct: 769 LASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWNINE 828
Query: 401 ANPDPVTTFEDISKNVSRVGFQKNGTWMYT-GGEDCTARIWDPR 529
N + T +I+ NV V F + + G D +D R
Sbjct: 829 RN--CLGTIRNIA-NVCCVQFSPQSSHLLAFGSSDFRTYCYDLR 869
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 179 HKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT-SMV 355
H G T+ +L L +G DH +KL++ SG + + L + + S++
Sbjct: 60 HHQDGVTSLALSNDSTLLASGSIDHCVKLYKFPSGEFQTNITRFTLPIRVLAFNGSGSLL 119
Query: 356 AAAG 367
AAAG
Sbjct: 120 AAAG 123
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 29.9 bits (64), Expect = 1.5
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQH--IRLYDLSSA 403
+ TGG D LW+ +G + V+ L S + A+G ++++D SS
Sbjct: 86 VATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSG 145
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
V + + V + G + G EDC+ +W+
Sbjct: 146 TLKCV--LDGPGAGIEWVRWHPRGHIVLAGSEDCSLWMWN 183
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 191 GDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEIS 340
G T+ + G+ L TG + T+ +W + G C+ T V ++ +S
Sbjct: 330 GVTSLTWIGTSKYLATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVS 379
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/126 (17%), Positives = 56/126 (44%), Gaps = 11/126 (8%)
Frame = +2
Query: 179 HKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHP-DSQVNSLEISPTSMV 355
H + + +L L + +D T+K+W+ CL + + D +N++ +S +
Sbjct: 163 HHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALSENGDI 222
Query: 356 -AAAGFQHIRLY--DLSSANPDP------VTTFEDISKNVSRVGFQ-KNGTWMYTGGEDC 505
+ Q I+++ +++ N V + + ++ + NG+ +++GG D
Sbjct: 223 YTGSSDQRIKVWRKNINEENVKKKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDG 282
Query: 506 TARIWD 523
+ +W+
Sbjct: 283 SILVWE 288
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 461 FQKNGTWMYTGGEDCTARIWD 523
FQ+ G ++ +GG D T +IWD
Sbjct: 259 FQEKGRFLISGGNDKTVKIWD 279
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 29.5 bits (63), Expect = 2.0
Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 GDTTASLGGSQVALVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGF 370
G S + +GG D + HSG +R + V+SL +SP +
Sbjct: 118 GVNAVSSSAKASCIYSGGADGMVCQIDPHSGNLIRKFKASTKTVSSLCVSPDGKILVTAS 177
Query: 371 QHIRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTG--GEDCTARIWDPRAAPRT 544
++ ++ S + F V V F ++G ++ + GE A +W A +
Sbjct: 178 TQLKTFNCSDLK--KIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIA-VWKTDGAKKQ 234
Query: 545 RCQKIFQVQAP 577
+ ++ P
Sbjct: 235 SASCVLALEHP 245
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSSANP 409
+ +GG +K+W +C++ ++ S + + + A+ L + A+
Sbjct: 108 ICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLIVHNLASG 167
Query: 410 DPVTTFEDISKNVSR-VGFQKNGT-WMYTGGEDCTARIWDPRA-APRTRCQKIFQVQAPV 580
T +D + V R + + ++ + T G+D T +WD +P+ K Q AP
Sbjct: 168 ARATELKDPNGQVLRLLDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLK--QHSAPT 225
Query: 581 NAVMLHPDQSQIM 619
V P +I+
Sbjct: 226 AGVCFSPSNEKII 238
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 437 SKNVSRVGFQKNGTWMYTGGEDCTARIWDPRAAPRTRCQKI 559
+K + +G ++ TGG DC +WD R + K+
Sbjct: 206 NKQSLALAVSSDGRYLATGGVDCHVHLWDIRTREHVQVNKL 246
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT-SMVAAAGFQ-HIRLYDLS 397
LV+G +++ W + G L+ + VN+L SP+ + V +AG + LY LS
Sbjct: 262 LVSGDSTGSVQFWDSQHGTLLQAHSNHKGDVNALAASPSHNRVFSAGADGQVILYKLS 319
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
L TG D+ +K+W SG C T + V +L S+++A+ +R +D
Sbjct: 364 LATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSLEISPT--SMVAAAGFQHIRLYD 391
L TG D+ +K+W SG C T + V +L S+++A+ +R +D
Sbjct: 404 LATGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L + +D TIK+W+ CL ++ D +NS+
Sbjct: 250 LYSSSWDTTIKVWRIADSKCLESIHAHDDAINSV 283
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 416 VTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD 523
+T + K VS + +YTG +D T R+WD
Sbjct: 144 LTQLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWD 179
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L +G D TIK+W + C++T+ S V SL
Sbjct: 287 LYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSL 320
>At4g32940.1 68417.m04687 vacuolar processing enzyme gamma /
gamma-VPE nearly identical to SP|Q39119 Vacuolar
processing enzyme, gamma-isozyme precursor (EC 3.4.22.-)
(Gamma-VPE) {Arabidopsis thaliana}
Length = 494
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 164 LNNKFHKMAGDTTASLGGSQVALVTGGYDHTIKLWQAHSG 283
++N F + GD TA GGS + +G DH + H G
Sbjct: 140 VDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIFYSDHGG 179
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L + D +K+W +G C TM+H +V ++
Sbjct: 281 LASASADKKVKVWDVATGTCKITMEHHTKEVQAV 314
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L + D +K+W +G C TM+H +V ++
Sbjct: 249 LASASADKKVKVWDVATGTCKITMEHHTKEVQAV 282
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 461 FQKNGTWMYTGGEDCTARIWD 523
F +G ++ + GEDC R+W+
Sbjct: 265 FSHDGKYLASAGEDCVVRVWN 285
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Frame = +2
Query: 209 LGGSQVAL--VTGGYDHTIK-----LWQAHSGVCLRTMQHPDSQVNSLEISPTSMVAAAG 367
L G+Q L TGG +K ++QA G+CL T +PD+ +N + +
Sbjct: 419 LSGNQAGLQFYTGGMLKDVKGKNGAVYQAFGGLCLETQSYPDA-LNHPKFPSQIVEPGKK 477
Query: 368 FQHIRLYDLS 397
++H L+ S
Sbjct: 478 YKHTMLFKFS 487
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 377 IRLYDLSSANPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWD-PR 529
IRL+D+SS V F V + +G + + G DCT R+W+ PR
Sbjct: 81 IRLWDISSRRT--VCQFPGHQGAVRGLTASTDGNVLVSCGTDCTVRLWNVPR 130
>At1g69400.2 68414.m07968 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 272
Score = 27.9 bits (59), Expect = 6.1
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNS-LEISPTSMVAAA-GFQHIRLYDLSSA 403
L+ +D ++L+ S + + ++ E TS + + GF IR YDL++
Sbjct: 28 LLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGF--IRRYDLNAG 85
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR 529
D + +DIS ++ V + G + TG ++ + WD R
Sbjct: 86 TVDTIGRHDDISTSI--VYSYEKGEVISTGFDE-KIKFWDTR 124
>At1g69400.1 68414.m07969 transducin family protein / WD-40 repeat
family protein similar to mitotic checkpoint protein
(GI:9294423) {Arabidopsis thaliana}; similar to mitotic
checkpoint protein (BUB3) (SP:O43684) (Homo sapiens)
Length = 314
Score = 27.9 bits (59), Expect = 6.1
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNS-LEISPTSMVAAA-GFQHIRLYDLSSA 403
L+ +D ++L+ S + + ++ E TS + + GF IR YDL++
Sbjct: 28 LLVASWDSYLRLYDVESSSLSLELNSQAALLDCCFENESTSFTSGSDGF--IRRYDLNAG 85
Query: 404 NPDPVTTFEDISKNVSRVGFQKNGTWMYTGGEDCTARIWDPR 529
D + +DIS ++ V + G + TG ++ + WD R
Sbjct: 86 TVDTIGRHDDISTSI--VYSYEKGEVISTGFDE-KIKFWDTR 124
>At1g29980.2 68414.m03666 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 371
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 560 ISFDTLYVVQPWDPISW 510
+ TLY VQ WDP +W
Sbjct: 118 VDLQTLYSVQGWDPYAW 134
>At1g29980.1 68414.m03667 expressed protein contains Pfam profile
PF04862: Protein of unknown function, DUF642
Length = 407
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 560 ISFDTLYVVQPWDPISW 510
+ TLY VQ WDP +W
Sbjct: 154 VDLQTLYSVQGWDPYAW 170
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 230 LVTGGYDHTIKLWQAHSGVCLRTMQHPDSQVNSL 331
L +G D++IK+W + C++T+ S V SL
Sbjct: 280 LYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSL 313
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 281 GVCLRTMQHPDSQVNSLEISPTS---MVAAAGF-QHIRLYDLSSANPDPVTTFEDISKNV 448
G+ LR ++ + SL ++ +S +A G +H+ ++D+ + + V F V
Sbjct: 210 GMKLREPRNKNHSRESLALAVSSDGRYLATGGVDRHVHIWDVRTR--EHVQAFPGHRNTV 267
Query: 449 SRVGFQKNGTWMYTGGEDCTARIWD 523
S + F+ + +Y+G D T ++W+
Sbjct: 268 SCLCFRYGTSELYSGSFDRTVKVWN 292
>At3g17940.1 68416.m02284 aldose 1-epimerase family protein similar
to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149]
from [Acinetobacter calcoaceticus]; contains Pfam
profile PF01263 Aldose 1-epimerase
Length = 341
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 275 HSGVCLRTMQHPDSQVNSLEISPTSMVAAAGFQHIRLYDLSS 400
H+GVCL T P++ +N + A + H L++ S+
Sbjct: 301 HAGVCLETQGFPNA-INQSNFPSVVVKAGEKYNHTMLFEFSA 341
>At2g39680.1 68415.m04868 expressed protein
Length = 84
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 637 ATLVSNHYLGLIRMKHYCIHRSLNLEYL 554
+T V+ + G IR+KH CI +LEYL
Sbjct: 37 STRVTTFFTG-IRLKHICISHFYHLEYL 63
>At2g08986.1 68415.m01009 hypothetical protein
Length = 1218
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 399 VPIQTRSQLLRTSPKTYLELGFRKMALGCTQEVRTAQP 512
V ++ S L T PKT+++LG+ AL ++V +P
Sbjct: 586 VGVRIVSLLEDTKPKTHMDLGYTMKALRSKKKVEDTKP 623
>At1g09000.1 68414.m01004 NPK1-related protein kinase, putative
(ANP1) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 1S GI:2342422
Length = 666
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 520 PYPGCAV--LTSCVHPSAIFLKPN 455
P+PG +TSC+ S IF+KP+
Sbjct: 28 PFPGVLADKITSCIRKSKIFIKPS 51
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,009,321
Number of Sequences: 28952
Number of extensions: 364177
Number of successful extensions: 1417
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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