Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0898
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0852 - 25371461-25371783,25372080-25372159,25372472-253725... 37 0.007
04_03_0156 - 11963580-11963914,11964422-11964517,11964618-119646... 35 0.039
02_05_1279 + 35427916-35429511 31 0.49
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 2.6
07_03_1476 + 26798812-26798838,26799162-26799237,26799322-268000... 29 2.6
05_07_0081 - 27572047-27572925,27573285-27573419 28 3.4
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081... 28 4.5
08_01_0214 - 1710317-1710443,1710839-1711047,1711161-1711420,171... 28 4.5
07_03_1477 + 26826661-26827019,26827218-26827338,26827813-268279... 27 6.0
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582... 27 7.9
03_05_0225 + 22111269-22111327,22111587-22111638,22112148-221121... 27 7.9
03_02_0239 + 6705279-6705532,6705701-6706025,6706129-6706281,670... 27 7.9
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 27 7.9
>06_03_0852 -
25371461-25371783,25372080-25372159,25372472-25372554,
25372597-25372740,25372836-25372946,25373238-25373354,
25373436-25373562,25374160-25374296
Length = 373
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = +2
Query: 8 YDAPAMIDKVLNVTGHQKIIYIGYSMGXXXXXXXMSSHPEYKSKIVSFIALAPAVYLDNV 187
YD PA++ + TG +KI YIG+S+G S H + + S + L P YL
Sbjct: 140 YDLPAVLQFAYDHTG-EKIHYIGHSLGTLMILAAFSEH-KLLDVVRSAVLLCPIAYLSRT 197
Query: 188 KPLATMFLKNMNIPDIM 238
K ++ + +IM
Sbjct: 198 KSKLLKLAAHIFLAEIM 214
>04_03_0156 -
11963580-11963914,11964422-11964517,11964618-11964697,
11965250-11965290,11965402-11965548,11965922-11966035,
11968842-11968961,11969491-11969631,11969892-11970014,
11970357-11970566
Length = 468
Score = 34.7 bits (76), Expect = 0.039
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 11 DAPAMIDKVLNVTGHQKIIYIGYSMGXXXXXXXMSSHPEYKSKIVSFIALAPAVYLDNV- 187
D A++ V + G QK+ Y+G+S+G +S + + S L+P +LD +
Sbjct: 212 DLSAVVQYVYSQAGQQKMHYVGHSLGTLIALAALSDQQQQIGMLRSAGLLSPIAFLDKMS 271
Query: 188 KPLA 199
PLA
Sbjct: 272 SPLA 275
>02_05_1279 + 35427916-35429511
Length = 531
Score = 31.1 bits (67), Expect = 0.49
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 217 ILQKHSRQWFDVVQIYGRGQ--SNERYDFAFVFWM*GHEREEGGCSHRISYV 68
++ K + W DVV ++ G+ E +F +M E +GGC HR+ YV
Sbjct: 420 VIPKGTNMWIDVVAMHRDGELWGEEASEFRPERFM--REGVQGGCRHRMGYV 469
>11_04_0236 +
15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 341 LINLVVGEDNEQTDPDVRYMLVARMEPASWRQIEHYGKI 457
LI+L VG D EQ D ++ LVA+M + YG++
Sbjct: 86 LISLRVGSDPEQADLEMLMRLVAKMNDQLFNGSVEYGQM 124
>07_03_1476 +
26798812-26798838,26799162-26799237,26799322-26800055,
26800397-26800546,26800659-26801042
Length = 456
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +3
Query: 81 LWEQPPSSRSCPHIQNTKAKSYLSLLWPLPYIWT 182
LW QP + CP N K S L + +WT
Sbjct: 280 LWMQPEQKQLCPAFNNLKKLSILCIHVEFDLLWT 313
>05_07_0081 - 27572047-27572925,27573285-27573419
Length = 337
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 102 SRSCPHIQNTKAKSYLSLLWPLPYIWTTSNH 194
SR C I L +L P+P +W T +H
Sbjct: 289 SRVCSGIATYSISQLLEILLPIPTVWLTCDH 319
>08_02_1208 +
25306367-25306567,25306709-25306931,25307930-25308175,
25308636-25308686,25308804-25309064,25309159-25309211,
25309292-25309661,25310068-25310882
Length = 739
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 226 TRHNAIERIYISNIRTRIQKVLRNFM 303
TRHN ++R +I+N+ +QK R+ M
Sbjct: 695 TRHNCLKRFFINNLYRFLQKNFRSNM 720
>08_01_0214 -
1710317-1710443,1710839-1711047,1711161-1711420,
1711442-1711534,1711745-1711872,1711958-1712151,
1712288-1712385,1712548-1712658,1712782-1712950,
1713109-1713181,1713311-1713507
Length = 552
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -3
Query: 432 LQEAGSILATNIYLTSGSVCSLS 364
L+E+ S+ + N+YL G++CS+S
Sbjct: 120 LKESNSLTSVNLYLFLGNLCSIS 142
>07_03_1477 +
26826661-26827019,26827218-26827338,26827813-26827962,
26828075-26828311
Length = 288
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = +3
Query: 81 LWEQPPSSRSCPHIQNTKAKSYLSLLWPLPYIW 179
LW QP + CP N K S L + +W
Sbjct: 161 LWVQPEQKQFCPAFNNLKTLSILCVYVEFDLLW 193
>08_02_0014 +
11255063-11255167,11256589-11256858,11257882-11258285,
11259011-11259242
Length = 336
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 61 DNIHRIFYGNNHLLHVHVLTSRIQKQNRIFHCS 159
D+ HR+F HL V + + K ++I+ CS
Sbjct: 98 DDAHRVFEYMPHLSSVGAIVAHAAKPHKIYSCS 130
>03_05_0225 +
22111269-22111327,22111587-22111638,22112148-22112151,
22112981-22113114,22113201-22113314,22113386-22113505,
22113587-22113618,22113854-22113866,22114144-22114242,
22114388-22114464,22114733-22114922,22115020-22115025
Length = 299
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 2 GKYDAPAMIDKVLNVTGHQK 61
G YDA ++ +LNV GH+K
Sbjct: 25 GGYDAAVKLELILNVMGHRK 44
>03_02_0239 +
6705279-6705532,6705701-6706025,6706129-6706281,
6709095-6709346,6709495-6709587,6710380-6710458,
6710556-6710662,6711550-6711795
Length = 502
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 127 IQKQNRIFHCSGPCRISGQRQTTGDYVFEEYEHTRHNAIERIYISNIRTR 276
+Q + R+F CS P I G V H AI ++S++R R
Sbjct: 112 LQNEGRLFECSYPRSIGGILGKWSMLVLVGDPHREMRAISLNFLSSVRLR 161
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +1
Query: 73 RIFYGNNHLLHVHVLTSRIQKQNRIFHCSGPCRISGQRQTTGDYVFEE--YEHTRHNAIE 246
+++ GN LH ++ ++++ R+ ++GQ G + + TR + +
Sbjct: 288 KLYVGN---LHSNITEDQLRQFARLEDAKAAQSLNGQLDIAGRVIKASVFFRFTRIHVVF 344
Query: 247 RIYISNIR 270
++YISNIR
Sbjct: 345 KLYISNIR 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,008
Number of Sequences: 37544
Number of extensions: 290722
Number of successful extensions: 824
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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