Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0898
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   0.97 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 142 RIFHCSGPCRISGQRQTTGDYV 207
           + FHC  P R   +    GDY+
Sbjct: 425 QFFHCYCPVRFGRKADPNGDYI 446


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 192 GLTLSRYTAGARAMKDTILLLYSGCEDMNVKKVV 91
           GL L         +KD++++L S  ++MN  K +
Sbjct: 278 GLKLINAENETAHIKDSLIVLTSALQEMNKSKSI 311


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 376 DRSGRKVYVGGKNGAGLLETDRALWENSFDR 468
           DR+   VY+  + G GL+    +  ++SF R
Sbjct: 200 DRTNTMVYIADEKGEGLIMYQNS--DDSFHR 228


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 90  VPIEYPMYIIFWWPVTLRTLSIMAGASYLP 1
           VP++Y  Y   WW   L  L  ++    +P
Sbjct: 515 VPVKYLTYEYPWWSHVLGWLCGLSSMLCIP 544


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 90  VPIEYPMYIIFWWPVTLRTLSIMAGASYLP 1
           VP++Y  Y   WW   L  L  ++    +P
Sbjct: 568 VPVKYLTYEYPWWSHVLGWLCGLSSMLCIP 597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,878
Number of Sequences: 438
Number of extensions: 3487
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)