Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0897
         (508 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.90 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   6.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.3  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 0.90
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 35   LVPNSCSPGIH 3
            LVP +C+PG+H
Sbjct: 1229 LVPQNCAPGLH 1239


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 323 GIPSIYSKVSQGIHVVTFH 267
           G+  I  K+ QG+   TFH
Sbjct: 625 GLKKITGKMFQGVRSPTFH 643


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 97  QKFTCKSKYIANKINYKTRKSSCR 26
           +++ CK+K   + I  KT ++ CR
Sbjct: 70  RQYVCKAKDEGSCIIDKTHRNQCR 93


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 97  QKFTCKSKYIANKINYKTRKSSCR 26
           +++ CK+K   + I  KT ++ CR
Sbjct: 70  RQYVCKAKDEGSCIIDKTHRNQCR 93


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 241 PHCTSRKRSNHKTR 200
           PH T ++ S HK R
Sbjct: 28  PHLTDQQASGHKKR 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,675
Number of Sequences: 336
Number of extensions: 2018
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)